SORTED
SORTED: A curated collection of interesting ideas, tools, and resources in neuroscience, data management, and data science, all in the spirit of Open Science. Additionally, it includes interesting miscellaneous links related to AI tools and productivity.
https://github.com/PTDZ/SORTED
Last synced: 19 days ago
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Additional Resources:
Journals (for Data Notes)
AI tools for researchers
Predatory journals/publishers etc.
- Litmaps
- Perplexity - to-date information by combining LLMs with real-time web access.
- Scholarcy
- Explainpaper - generated explanations, improving comprehension.
- Connected Papers
- Research Rabbit
- Elicit
Data Visualisation
Predatory journals/publishers etc.
- Coolors
- HSLuv - friendly alternative to HSL.
- Information is beautiful
- BrainPainter
Initiatives, research groups, associations, labs, companies
Predatory journals/publishers etc.
- Think-Check-Submit - sector initiative aims to educate researchers, promote integrity, and build trust in credible research and publications.
- Beall's List
Summer Schools
Miscellaneous for Researchers
Coding/ Software
- Dask
- Docker - level virtualization to deliver software in packages called containers.
- Statistics in R
Fellowships & Grants
- ReproNim/INCF Training Fellowship
- HFSP Fellowships
- NIH Grants
- European Research Council Grants
- EMBO Fellowships
- Marie Skłodowska-Curie Actions
- Traveling Fellowships, The Company of Biologists
General tools
- Sample Consent Forms for neuroimaging research
- Most Wiedzy/ Bridge of Knowledge - based system with collection of publications, studies, projects and a lot of other types of resources from a number of different subject areas (open-access).
- Journal Citation Reports - neutral data".
- Protocols.io
- DataLad
- ADDI - workbench): Alzheimer's Disease Data Initiative; "a free data sharing platform, data science tools, funding opportunities, and global collaborations, ADDI is advancing scientific breakthroughs and accelerating progress towards new treatments and cures for AD and related dementias".
- The Human Protein Atlas - based program initiated in 2003 with the aim to map all the human proteins in cells, tissues, and organs using an integration of various omics technologies, including antibody-based imaging, mass spectrometry-based proteomics, transcriptomics, and systems biology".
- BIDS
Learning
- Seeing Theory
- Neuroscience Tutorials
- DataCamp
- NeuroStars
- ReproNim Statistics Module - values and their issues / Statistical power in neuroimaging and statistical reproducibility / The positive Predictive Value / Cultural and psychological issues
Neuroscience
- fMRIPrep - based and resting-state fMRI data.
- BrainMap - based results (x,y,z) in Talairach or MNI space.
- ReproNim
- NiMARE - analyses (Neuroimaging Meta-Analysis Research Environment).
- BrainAge - cole/brainageR): Brain-age models (brain-predicted age value from a raw T1-weighted MRI scans).
- Neurosynth - scale, automated synthesis of functional magnetic resonance imaging (fMRI) data.
- NEMAR
- BrainIAK
- SPAMRI - Based Processing and Analysis of Magnetic Resonance Imaging.
- ENIGMA toolbox - and macroscale data, Multiscale analytical workflows, 100+ ENIGMA-derived statistical maps.
Summer Schools
Open Data Science
Data Repositories (suitable for neuroimaging datasets)
- DABI
- GIN
- NeuroVault
- Zenodo - purpose open data repository.
- OpenNeuro PET - compliant PET data.
- BossDB
- Harvard Dataverse
- NeMO - omic data from brain research projects.
- OpenNeuro - compliant MRI, PET, MEG, and EEG data.
- Dryad
Journals (for Data Notes)
Productivity
Predatory journals/publishers etc.
Reading corner
Design
- The Design of Everyday Things - friendly.
Other
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"