SORTED
SORTED: A curated collection of interesting ideas, tools, and resources in neuroscience, data management, and data science, all in the spirit of Open Science. Additionally, it includes interesting miscellaneous links related to AI tools and productivity.
https://github.com/PTDZ/SORTED
Last synced: 13 days ago
JSON representation
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Open data movement
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Other lists
- Most Cited Deep Learning Papers - Most Cited Deep Learning Papers
- Wikipedia: List of neuroscience databases
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Platforms
- OpenNeuro - compliant MRI, PET, MEG, EEG, and iEEG data
- OpenNeuro PET - compliant PET data
- NeuroVault
- BossDB
- GigaDB
- Machine learning datasets
- GIN
- NeMO - omic Archive (NeMO Archive) is a data repository specifically focused on the storage and dissemination of omic data generated from the BRAIN Initiative, SCORCH consortium and related brain research projects
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Journals
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Additional Resources:
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Journals (for Data Notes)
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Reading corner
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Programming
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Unreliable Science (*and how to try overcome this issue)
- Paper - wide attention through gradual processes of diffusion."
- Paper
- Paper - but-bogus effects
- Paper - positive findings (≤ .05), flexibility in data collection, analysis, and reporting dramatically increases actual false-positive rates."
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- Paper - 9)
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- Article
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- Paper - but-bogus effects
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Design
- The Design of Everyday Things - friendly.
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Relaxing on a hammock under a tree...
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Articles
- Paper
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
- Paper
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
- Paper
- Paper
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
- Paper
- Paper
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
- Paper
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Article
- Paper
- Paper
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
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- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
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Other
- Karty Data Science
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
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Other articles
- Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
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Tools
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AI: writing/ information searching
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General: research
- BIDS
- Protocols.io
- ADDI - workbench): Alzheimer's Disease Data Initiative; "a free data sharing platform, data science tools, funding opportunities, and global collaborations, ADDI is advancing scientific breakthroughs and accelerating progress towards new treatments and cures for AD and related dementias"
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Coding/ Software
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Neuroscience
- Neurosynth - scale, automated synthesis of functional magnetic resonance imaging (fMRI) data
- NEMAR
- BrainIAK
- ENIGMA toolbox - and macroscale data, Multiscale analytical workflows, 100+ ENIGMA-derived statistical maps
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AI tools for researchers
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Predatory journals/publishers etc.
- Litmaps
- Perplexity - to-date information by combining LLMs with real-time web access.
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Miscellaneous for Researchers
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Learning
- Seeing Theory
- ReproNim Statistics Module - values and their issues / Statistical power in neuroimaging and statistical reproducibility / The positive Predictive Value / Cultural and psychological issues
- Neuroscience Tutorials
- ReproNim Statistics Module - values and their issues / Statistical power in neuroimaging and statistical reproducibility / The positive Predictive Value / Cultural and psychological issues
- NeuroStars
- ReproNim Statistics Module - values and their issues / Statistical power in neuroimaging and statistical reproducibility / The positive Predictive Value / Cultural and psychological issues
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Neuroscience
- NiMARE - analyses (Neuroimaging Meta-Analysis Research Environment).
- fMRIPrep - based and resting-state fMRI data.
- BrainMap - based results (x,y,z) in Talairach or MNI space.
- ReproNim
- SPAMRI - Based Processing and Analysis of Magnetic Resonance Imaging
- BrainAge - cole/brainageR): Brain-age models (brain-predicted age value from a raw T1-weighted MRI scans).
- Neurosynth - scale, automated synthesis of functional magnetic resonance imaging (fMRI) data.
- NEMAR
- BrainIAK
- SPAMRI - Based Processing and Analysis of Magnetic Resonance Imaging.
- ENIGMA toolbox - and macroscale data, Multiscale analytical workflows, 100+ ENIGMA-derived statistical maps.
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General tools
- Sample Consent Forms for neuroimaging research
- Most Wiedzy/ Bridge of Knowledge - based system with collection of publications, studies, projects and a lot of other types of resources from a number of different subject areas (open-access).
- Journal Citation Reports - neutral data".
- BIDS
- Protocols.io
- DataLad
- ADDI - workbench): Alzheimer's Disease Data Initiative; "a free data sharing platform, data science tools, funding opportunities, and global collaborations, ADDI is advancing scientific breakthroughs and accelerating progress towards new treatments and cures for AD and related dementias".
- The Human Protein Atlas - based program initiated in 2003 with the aim to map all the human proteins in cells, tissues, and organs using an integration of various omics technologies, including antibody-based imaging, mass spectrometry-based proteomics, transcriptomics, and systems biology".
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Fellowships & Grants
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Coding/ Software
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Summer Schools
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Open Data Science
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Data Repositories (suitable for neuroimaging datasets)
- DABI
- GigaDB
- GIN
- NeuroVault
- Zenodo - purpose open data repository.
- OpenNeuro - compliant MRI, PET, MEG, and EEG data.
- OpenNeuro PET - compliant PET data.
- BossDB
- Harvard Dataverse
- NeMO - omic data from brain research projects.
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Journals (for Data Notes)
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Data visualisation
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AI: writing/ information searching
- BrainPainter
- HSLuv - friendly alternative to HSL
- Information is beautiful
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Publishing
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Predatory journals/publishers etc.
- Think-Check-Submit - sector initiative aims to educate researchers, promote integrity, and build trust in credible research and publications
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Initiatives, research groups, associations, labs, companies
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Predatory journals/publishers etc.
- Beall's List: expanded 2022
- Think-Check-Submit - sector initiative aims to educate researchers, promote integrity, and build trust in credible research and publications.
- Beall's List
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Summer Schools
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Summer Schools / Courses / Hackathons etc.
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Other
- Neurohackademy
- Neuromatch - week program)) & Neuromatch Conference (a conference for the computational neuroscience community)
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Conferences / Symposia
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Other
- AI in aging and age-related diseases - 13 November 2022, on-line and on-demand; deadline: 3 October 2022
- NEURONUS Neuroscience Forum - 17.10.2022)
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Initiatives, research groups, associations...
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Other
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Interesting companies & labs, internships, job advertisements, grants & travel grants
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Miscellaneous
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Other
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AI tools
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Predatory journals/publishers etc.
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Biohacking
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Predatory journals/publishers etc.
- Biohacking Brain Health
- Bulletproof Blog
- SelfHacked - based information on health, biohacking, and self-improvement.
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Productivity
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Predatory journals/publishers etc.
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Data Visualisation
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Predatory journals/publishers etc.
- Coolors
- BrainPainter
- HSLuv - friendly alternative to HSL.
- Information is beautiful
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Categories
Reading corner
176
Miscellaneous for Researchers
39
Open Data Science
15
Initiatives, research groups, associations, labs, companies
11
Open data movement
11
Tools
10
Interesting companies & labs, internships, job advertisements, grants & travel grants
6
Additional Resources:
5
Data Visualisation
4
Biohacking
3
Data visualisation
3
Summer Schools / Courses / Hackathons etc.
2
Initiatives, research groups, associations...
2
AI tools for researchers
2
Conferences / Symposia
2
Productivity
1
AI tools
1
Miscellaneous
1
Publishing
1
Sub Categories
Articles
113
Unreliable Science (*and how to try overcome this issue)
49
Other
23
Predatory journals/publishers etc.
15
Neuroscience
15
Journals (for Data Notes)
10
Summer Schools
10
Fellowships & Grants
10
Data Repositories (suitable for neuroimaging datasets)
10
General tools
8
Platforms
8
Learning
6
AI: writing/ information searching
5
General: research
3
Coding/ Software
3
Other lists
2
Relaxing on a hammock under a tree...
1
Programming
1
Other articles
1
Design
1
Journals
1
Keywords
awesome
4
awesome-list
4
neuroscience
3
computational-neuroscience
2
brain
2
open-science
2
list
2
remarkable-tablet
1
python
1
nirs
1
mooc
1
meg
1
matlab
1
intelligence
1
eeg
1
machine-learning
1
deep-neural-networks
1
deep-learning
1
tutorials
1
resources
1
quickstart
1
collection
1
science
1
open-datasets
1
open-data
1
computational-science
1
simulation-neuroscience
1
neuroscience-methods
1
neuroscience-data
1
neuron-models
1
neuroimaging-data
1
neural-simulators
1
neural-simulations
1
electrophysiological-data
1
computational-biology
1