SORTED

SORTED: A curated collection of interesting ideas, tools, and resources in neuroscience, data management, and data science, all in the spirit of Open Science. Additionally, it includes interesting miscellaneous links related to AI tools and productivity.
https://github.com/PTDZ/SORTED

Last synced: 17 days ago
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Additional Resources:
- Journals (for Data Notes)
AI tools for researchers
- Predatory journals/publishers etc.
  - Litmaps
  - Perplexity - to-date information by combining LLMs with real-time web access.
  - Scholarcy
  - Explainpaper - generated explanations, improving comprehension.
  - Connected Papers
  - Research Rabbit
Data Visualisation
- Predatory journals/publishers etc.
  - Coolors
  - HSLuv - friendly alternative to HSL.
  - Information is beautiful
Initiatives, research groups, associations, labs, companies
- Predatory journals/publishers etc.
  - Think-Check-Submit - sector initiative aims to educate researchers, promote integrity, and build trust in credible research and publications.
  - Beall's List
- Summer Schools
Miscellaneous for Researchers
- Coding/ Software
  - Dask
  - Docker - level virtualization to deliver software in packages called containers.
- Fellowships & Grants
- General tools
  - Sample Consent Forms for neuroimaging research
  - Most Wiedzy/ Bridge of Knowledge - based system with collection of publications, studies, projects and a lot of other types of resources from a number of different subject areas (open-access).
  - Journal Citation Reports - neutral data".
  - Protocols.io
  - DataLad
  - ADDI - workbench): Alzheimer's Disease Data Initiative; "a free data sharing platform, data science tools, funding opportunities, and global collaborations, ADDI is advancing scientific breakthroughs and accelerating progress towards new treatments and cures for AD and related dementias".
  - The Human Protein Atlas - based program initiated in 2003 with the aim to map all the human proteins in cells, tissues, and organs using an integration of various omics technologies, including antibody-based imaging, mass spectrometry-based proteomics, transcriptomics, and systems biology".
  - BIDS
- Learning
- Neuroscience
  - fMRIPrep - based and resting-state fMRI data.
  - BrainMap - based results (x,y,z) in Talairach or MNI space.
  - ReproNim
  - NiMARE - analyses (Neuroimaging Meta-Analysis Research Environment).
  - BrainAge - cole/brainageR): Brain-age models (brain-predicted age value from a raw T1-weighted MRI scans).
  - Neurosynth - scale, automated synthesis of functional magnetic resonance imaging (fMRI) data.
  - NEMAR
  - BrainIAK
- Summer Schools
  - Neurohackademy
  - Google Summer of Code
Open Data Science
- Data Repositories (suitable for neuroimaging datasets)
  - DABI
  - GIN
  - NeuroVault
  - Zenodo - purpose open data repository.
  - OpenNeuro PET - compliant PET data.
  - BossDB
  - Harvard Dataverse
  - NeMO - omic data from brain research projects.
  - OpenNeuro - compliant MRI, PET, MEG, and EEG data.
  - Dryad
- Journals (for Data Notes)
Productivity
- Predatory journals/publishers etc.
  - reMarkable List
Reading corner
- Design
  - The Design of Everyday Things - friendly.
- Other
  - Paper - user’s perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results"
- Programming
  - The Art of Readable Code
- Relaxing on a hammock under a tree...
  - What If? Serious Scientific Answers to Absurd Hypothetical Questions
- Unreliable Science (*and how to try overcome this issue)
  - Paper - wide attention through gradual processes of diffusion."
  - Paper - positive findings (≤ .05), flexibility in data collection, analysis, and reporting dramatically increases actual false-positive rates."
  - Paper
  - Paper
  - Paper - 9)
  - Paper
  - Paper
  - Article
  - Paper
  - Paper

Programming Languages

Python 1

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Awesome

SORTED

Additional Resources:

Journals (for Data Notes)

AI tools for researchers

Predatory journals/publishers etc.

Data Visualisation

Predatory journals/publishers etc.

Initiatives, research groups, associations, labs, companies

Predatory journals/publishers etc.

Summer Schools

Miscellaneous for Researchers

Coding/ Software

Fellowships & Grants

General tools

Learning

Neuroscience

Summer Schools

Open Data Science

Data Repositories (suitable for neuroimaging datasets)

Journals (for Data Notes)

Productivity

Predatory journals/publishers etc.

Reading corner

Design

Other

Programming

Relaxing on a hammock under a tree...

Unreliable Science (*and how to try overcome this issue)