https://github.com/orangeSi/pymsaploter

plot Multiple Sequence Alignment(MSA) of Clustal by python package
https://github.com/orangeSi/pymsaploter

multiple-sequence-alignment python3 svg visualization

Last synced: 4 months ago
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plot Multiple Sequence Alignment(MSA) of Clustal by python package

• Host: GitHub
• URL: https://github.com/orangeSi/pymsaploter
• Owner: orangeSi
• Created: 2018-03-20T17:43:21.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2023-03-14T02:19:24.000Z (over 1 year ago)
• Last Synced: 2024-01-17T00:47:27.974Z (6 months ago)
• Topics: multiple-sequence-alignment, python3, svg, visualization
• Language: HTML
• Homepage: https://orangesi.github.io/pymsaploter/
• Size: 1.73 MB
• Stars: 7
• Watchers: 2
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Lists

• repo-5916-awesome-genome-visualization - pymsaplotter - genome-visualization/pymsaplotter.png) (MSA)
• awesome-genome-visualization - pymsaplotter

README

        
# pymsaploter

Usage:


 cd example


 cat demo.sh


![alt text](example/out.svg)




## Online explore msa by plotlyjs in a single html page file at https://orangesi.github.io/pymsaploter/

TODO:


  1.add consensus sequence in buttom of fragments


  2.add start position for every line