Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
repo-5916-awesome-genome-visualization
https://github.com/orgTestCodacy11KRepos110MB/repo-5916-awesome-genome-visualization
- Genoverse - genome-visualization/genoverse.png)
- BasePlayer - genome-visualization/baseplayer.png)
- Celera genome browser - genome-visualization/celera.jpeg)
- IGB - genome-visualization/igb.jpg)
- IGV - genome-visualization/igv.jpg)
- Savant - genome-visualization/savant.jpg)
- Tablet - genome-visualization/tablet.jpeg)
- Biodalliance - genome-visualization/biodalliance.png)
- Ensembl genome browser - genome-visualization/ensembl.png)
- Ensembl genome browser 2020 edition - genome-visualization/2020ensembl.png)
- GBrowse 2 - genome-visualization/gbrowse.png)
- GenomeMaps - genome-visualization/genomemaps.jpg)
- Gosling - genome-visualization/gosling.png)
- HiGlass - genome-visualization/higlass.png)
- IGV.js - genome-visualization/igvjs.png)
- JBrowse - registry. Runs on the web or as a desktop app using Electron) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/jbrowse.png)
- JBrowse 2 - genome-visualization/jbrowse2.png)
- Kero-BROWSE - 153,744,762 human vs chimp) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/kerobrowse.png)
- NCBI Genome Data Viewer - genome-visualization/gdv.png)
- Nucleome browser - genome-visualization/nucleome.png)
- Pileup.js - genome-visualization/pileupjs.png)
- Trackster - genome-visualization/trackster.png)
- UCSC genome browser - genome-visualization/ucsc.jpg)
- Valis browser - genome-visualization/valis.png)
- WashU epigenomics browser - genome-visualization/washu.png)
- Zenbu - genome-visualization/zenbu.png)
- UTGB (University of Tokyo Genome Browser) - genome-visualization/utgb.png)
- Argo - genome-visualization/argo.png)
- 10x genomics/Loupe - genome-visualization/10xgenomics.png)
- Alamut - genome-visualization/alamut.png)
- ATCC Genome Portal (American Type Culture Collection) - genome-visualization/atcc.png)
- Benchling - genome-visualization/benchling.png)
- CLC Genomics workbench - genome-visualization/clcgenomics.png)
- DNASTAR - genome-visualization/dnastar.png)
- Geneious - genome-visualization/geneious.png)
- Genestack - genome-visualization/genestack.png)
- Golden Helix - genome-visualization/goldenhelix.png)
- Lucid viewer - genome-visualization/lucidalign.png)
- MacVector - genome-visualization/macvector.png)
- Persephone - genome-visualization/persephone.jpg)
- SnapGene - genome-visualization/snapgene.png)
- Strand NGS - genome-visualization/strandngs.png)
- Bionano - genome-visualization/bionano.png)
- Circa - genome-visualization/circa.png)
- ERGO - genome-visualization/ergo.png)
- AA (alignment annotator) - genome-visualization/aa.png)
- abrowse - genome-visualization/abrowse.png)
- alignment.js - genome-visualization/alignmentjs.png)
- AlignmentComparator - genome-visualization/alignmentcomparator.png)
- AlignmentViewer - genome-visualization/alignmentviewer.png)
- AliView - genome-visualization/aliview.png)
- BioJS/MSA - genome-visualization/biojsmsa.png)
- rMSA - genome-visualization/rmsa.png)
- Boxshade - genome-visualization/boxshade.png)
- ESPript - genome-visualization/espript.png)
- Jalview - genome-visualization/jalview.jpg)
- JSAV - genome-visualization/jsav.png)
- MSABrowser - genome-visualization/msabrowser.png)
- msaR - genome-visualization/msar.png)
- MView - genome-visualization/mview.png)
- NCBI MSA Viewer - genome-visualization/ncbimsa.png)
- pyBoxshade - genome-visualization/pyboxshade.png)
- pymsaplotter - genome-visualization/pymsaplotter.png)
- React MSAViewer - genome-visualization/react-msa-viewer.png)
- react-msaview - genome-visualization/react-msaview.png)
- seqotron - genome-visualization/seqotron.png)
- STRAP - genome-visualization/strap.png)
- TeXShade - genome-visualization/texshade.png)
- Wasabi - genome-visualization/wasabi.png)
- SNIPViz - genome-visualization/snpviz.png)
- ALVIS (MSA viewer) - srv/sequencebundles/ source code https://bitbucket.org/schwarzlab/alvis/src/master/) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/alvis.png)
- alignfigR - genome-visualization/alignfigr.png)
- alen - genome-visualization/alen.png)
- ProViz - genome-visualization/proviz.png)
- MEGA-X - genome-visualization/megax.png)
- AliTreeViz - genome-visualization/alitreeviz.png)
- ete - genome-visualization/ete.png)
- ggtree - smu.top/treedata-book/chapter7.html?q=msa#msaplot for MSA example) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/ggtree.png)
- seqvisr - genome-visualization/seqvisr.png)
- Seaview - genome-visualization/seaview.png)
- ggmsa - genome-visualization/ggmsa.png)
- CView - genome-visualization/cview.png)
- LogoJS - genome-visualization/logojs.png)
- aCNVViewer - genome-visualization/acnvviewer.png)
- CNVkit - genome-visualization/cnvkit.png)
- BAMScale - genome-visualization/bamscale.png)
- cnvCurator - genome-visualization/cnvcurator.png)
- GenomeSpy - genome-visualization/genomespy.png)
- GenomePaint - genome-visualization/genomepaint.png)
- covviz - genome-visualization/covviz.png)
- PURPLE - distance rainfall plots/katagesis plots are not technically in genomic coordinates, but do indicate genomic cluster of variatnts) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/purple.png)
- bcftools cnv - genome-visualization/bcftools_cnv.png)
- mocha - genome-visualization/mocha.png)
- genevisR - genome-visualization/genevisr.png)
- copynumber - genome-visualization/copynumber.png)
- SnoopCGH - genome-visualization/snoopcgh.jpg)
- Genovar - genome-visualization/genovar.png)
- CNANorm - genome-visualization/cnanorm.png)
- CNSpector - genome-visualization/cnspector.png)
- sequenza - genome-visualization/sequenza.png)
- BAMSnap - genome-visualization/bamsnap.png)
- ChIA-Pipe - genome-visualization/chiapipe.png)
- CNView - genome-visualization/cnview.jpg)
- CNVPlot - genome-visualization/cnvplot.jpg)
- CNVpytor - genome-visualization/cnvpytor.png)
- DNAPlotLib - genome-visualization/dnaplotlib.png)
- ExonIntron - genome-visualization/exonintron.png)
- FeatureViewer - genome-visualization/featureviewer.png)
- Geneviz - genome-visualization/geneviz.png)
- Genome STRiP - genome-visualization/genomestrip.png)
- GenomeTools - genome-visualization/genometools.png)
- GenomeView - genome-visualization/genomeview.png)
- genoPlotR - genome-visualization/genoplotr.png)
- ggbio - genome-visualization/ggbio.png)
- GGgenes - genome-visualization/gggenes.png)
- GGsashimi - genome-visualization/ggsashimi.png)
- gtrellis - genome-visualization/gtrellis.png)
- Gviz - genome-visualization/gviz.png)
- Hagfish - genome-visualization/hagfish.png)
- HiCPlotter - genome-visualization/hicplotter.jpg)
- JVarKit/BamToSVG - genome-visualization/bamtosvg.jpg)
- Lollipops - genome-visualization/lollipops.png)
- Mason - genome-visualization/mason.png)
- Methplotlib - genome-visualization/methplotlib.jpg)
- Pairoscope - genome-visualization/pairoscope.png)
- pauvre - genome-visualization/pauvre.png)
- pyGenomeTracks - genome-visualization/pygenometracks.png)
- RACER - genome-visualization/racer.png)
- RepViz - genome-visualization/repviz.png)
- Samplot - genome-visualization/samplot.jpg)
- SashimiPlot - genome-visualization/sashimi-plot-example.png)
- shabam - genome-visualization/shabam.png)
- SparK - genome-visualization/spark.png)
- Spliceclust - genome-visualization/spliceclust.png)
- Sushi - genome-visualization/sushi.png)
- svist4get - genome-visualization/svis4get.png)
- svv - genome-visualization/svv.png)
- svviz - genome-visualization/svviz.png)
- svviz2 - genome-visualization/svviz2.png)
- trackViewer - genome-visualization/trackviewer.png)
- mummer2circos - genome-visualization/mummer2circos.png)
- cgplot - genome-visualization/cgplot.png)
- bcftools roh - roh.py helper too) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/bcftools_roh.png)
- Chimeraviz - genome-visualization/chimeraviz.png)
- clinker (gene fusion software) - genome-visualization/clinker_fusion.png)
- arriba - genome-visualization/arriba.png)
- FusionInspector - genome-visualization/fusioninspector.png)
- MAVIS - genome-visualization/mavis.png)
- GenomeView (java app) - genome-visualization/genomeview_java.png)
- pyBamView - genome-visualization/pybamview.png)
- Chromatic - genome-visualization/chromatic.png)
- Gambit - genome-visualization/gambit.png)
- LookSeq - genome-visualization/lookseq.png)
- udon - genome-visualization/udon.png)
- GSSPlayground - genome-visualization/gssplayground.png)
- Aequatus - genome-visualization/aequatus.png)
- AliTV - genome-visualization/alitv.png)
- Artemis comparison tool (ACT) - genome-visualization/artemis_act.png)
- Biodalliance comparative demo - genome-visualization/biodalliance_comparative.png)
- Chromatiblock - genome-visualization/chromatiblock.png)
- CMap - genome-visualization/cmap.jpg)
- CoGe - genome-visualization/coge.png)
- Comparative assembly hub / "snake track" - genome-visualization/comparative_assembly_hub.png)
- CrossBrowse - genome-visualization/crossbrowse.png)
- CVit - genome-visualization/cvit.png)
- Cvit.js - genome-visualization/cvitjs.png)
- EasyFig - genome-visualization/easyfig.png)
- GBrowse_syn - genome-visualization/gbrowse_syn.png)
- Genome Context Viewer - genome-visualization/genome_context_viewer.png)
- Genome-plots-processing - genome-visualization/genome_plots_processing.png)
- Genomicus - genome-visualization/genomicus.png)
- gggenomes - genome-visualization/gggenomes.png)
- GIVE - genome-visualization/give_hic.png)
- mauve-viewer - genome-visualization/mauve_viewer.png)
- MCScan (python version) - genome-visualization/mcscan_python.png)
- MCScanX - genome-visualization/mcscanx.png)
- mGSV (multiple genome synteny viewer) - genome-visualization/mgsv.jpg)
- MizBee - genome-visualization/mizbee.jpg)
- Multiple genome viewer - genome-visualization/mgv.png)
- OMA local synteny browser - genome-visualization/oma.png)
- pafr - genome-visualization/pafr.png)
- Parasight - genome-visualization/parasight.png)
- progressiveMauve viewer - genome-visualization/progressive_mauve.png)
- SyMap - genome-visualization/symap.png)
- Synima - genome-visualization/synima.png)
- Synteny browser - genome-visualization/jax_synteny_browser.png)
- SynTView - genome-visualization/syntview.png)
- SynVisio - genome-visualization/synvisio.png)
- VISTA browser - genome-visualization/vista.png)
- XMatchView - genome-visualization/xmatchview.png)
- LinearDisplay.pl - genome-visualization/lineardisplay.png)
- FastANI - genome-visualization/fastani.jpg)
- clinker - genome-visualization/clinker.png)
- RectChr - genome-visualization/rectchr.png)
- pretzel - genome-visualization/pretzel.png)
- PipMaker - example/index.html) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/pipmaker.png)
- WGDI - genome-visualization/wgdi.png)
- BRIG - genome-visualization/brig.jpg)
- GENESPACE - genome-visualization/genespace.png)
- miropeats - genome-visualization/miropeats.png)
- syntenyPlotteR - genome-visualization/syntenyplotter.png)
- chromoMap - genome-visualization/chromomap.png)
- SafFire - genome-visualization/saffire.png)
- SimpleSynteny - genome-visualization/simplesynteny.jpg)
- Cinteny - genome-visualization/cinteny.png)
- AutoGraph - genome-visualization/autograph.png)
- EvolutionHighway - fb/syntenyPlotteR, paper https://doi.org/10.1126/science.1111387) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/evolutionaryhighway.jpg)
- Smash++ - genome-visualization/smashpp.png)
- plotsr - genome-visualization/plotsr.png)
- Sybil - genome-visualization/sybil.png)
- SyntenyPortal - genome-visualization/syntenyportal.png)
- SequenceSurveyor - genome-visualization/sequencesurveyor.png)
- PSAT - genome-visualization/psat.png)
- TreeBrowser (MicrobesOnline) - genome-visualization/treegenome.png)
- GenomicBreaks - genome-visualization/genomicbreaks.png)
- GenomeSyn - genome-visualization/genomesyn.png)
- CrowsNest - genome-visualization/crowsnest.png)
- GGisy - genome-visualization/ggisy.png)
- multiGenomicContext - genome-visualization/multicontext.png)
- AccuSyn - genome-visualization/accusyn.png)
- Millefy - genome-visualization/millefy.png)
- gingko - genome-visualization/gingko.jpeg)
- copykat - genome-visualization/copykat.png)
- scCNV_heatmap - genome-visualization/sccnv_heatmap.png)
- casper - genome-visualization/casper.png)
- ArchR - genome-visualization/archr.png)
- numbat - genome-visualization/numbat.png)
- PureScript genetics browser - genome-visualization/purescript.png)
- Locuszoom - genome-visualization/locuszoom.png)
- LDBlockShow - genome-visualization/ldblockshow.png)
- ggplot2 manhattan plot - genome-visualization/ggplot2_manhattan.png)
- GeneticsMakie.jl - genome-visualization/geneticsmakie.png)
- shinyChromosome - genome-visualization/shinychromosome.png)
- D-GENIES - genome-visualization/dgenies.png)
- Delly-maze - genomics.com/maze/) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/maze.png)
- Discoplot - genome-visualization/discoplot.png)
- Dot - genome-visualization/dot.png)
- Dotlet - genome-visualization/dotlet.png)
- Dotplot (chirimoyo)
- iLambda/Dotplot
- dotPlotly - genome-visualization/dotplotly.png)
- Dottup - structural-variation/data/GRCh37/heterochromatic_extensions.pdf) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/dottup.png)
- FlexiDot - genome-visualization/flexidot.png)
- Gepard - genome-visualization/gepard.jpeg)
- Jdot - genome-visualization/jdot.png)
- last-dotplot - genome-visualization/last_dotplot.png)
- mcutils - genome-visualization/mcutils_dotplot.jpeg)
- Minidot - genome-visualization/minidot.png)
- Mummer-idotplot
- Mummerplot - genome-visualization/mummerplot.png)
- ggplot2 mummerplot - genome-visualization/mummerplot_ggplot2.png)
- Redotable - genome-visualization/redotable.png)
- syntenyPlotByR - genome-visualization/synteny_plot_by_r.png)
- Dotter - genome-visualization/dotter.png)
- JGI/IMG - genome-visualization/jgiimg.png)
- MashMap - genome-visualization/mashmap.png)
- oxford-plots - plots/blob/master/examples/pig_X_Y.txt) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/oxford.png)
- DAGchainer - genome-visualization/dagchainer.png)
- local-rearrangements - dotplot. Nice figure using it here https://genomemedicine.biomedcentral.com/articles/10.1186/s13073-020-00762-1/figures/4) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/local-rearrangements.png)
- TnT - genome-visualization/tnt.png)
- Apollo aka WebApollo - genome-visualization/webapollo.jpg)
- ggtranscript - genome-visualization/ggtranscript.png)
- Edinburgh-Genome-Foundry/DnaFeaturesViewer - genome-visualization/dnafeaturesviewer.png)
- GeneViTo - genome-visualization/genevito.jpg)
- GECO - genome-visualization/geco.png)
- GeCoViz - genome-visualization/gecoviz.png)
- AGB assembly graph browser
- Bandage - genome-visualization/bandage.png)
- gfaestus - HnKXIrJl4) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/gfaestus.png)
- graphgenomeviewer - genome-visualization/graphgenomeviewer.png)
- MoMi-G - genome-visualization/momig.png)
- odgi draw + odgi viz + odgi inject - genome-visualization/odgi.png)
- sequence tube map - genome-visualization/sequence_tube_map.png)
- Shasta - genome-visualization/shasta.png)
- LINX - genome-visualization/linx.png)
- panGraphViewer - genome-visualization/pangraphviewer.jpg)
- IGGE - genome-visualization/igge.png)
- gGnomes - genome-visualization/ggnomesr.png)
- gGnomes.js - genome-visualization/ggnomes.png)
- Ribbon - genome-visualization/genomeribbon.png)
- Gremlin - genome-visualization/gremlin.png)
- InGAP-SV - genome-visualization/ingap_sv.png)
- Introgression browser - genome-visualization/introgression_browser.png)
- SplitThreader - genome-visualization/splitthreader.png)
- SMRT View - View) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/smrtview.png)
- NeoLoopFinder - genome-visualization/neoloopfinder.png)
- SVPV - genome-visualization/svpv.jpg)
- AmpliconArchitect - genome-visualization/ampliconarchitect.png)
- Alan - genome-visualization/alan.png)
- Alv - genome-visualization/alv.png)
- ASCIIGenome - genome-visualization/asciigenome.png)
- Bamcov - genome-visualization/bamcov.png)
- Hapviz - genome-visualization/hapviz.png)
- plotReads - genome-visualization/plotreads.png)
- Rna Alignment Viewers (Colorstock, SScolor, Ratón) - genome-visualization/rnaalignment.png)
- Sam2pairwise
- Samtools depth visualization - genome-visualization/depthplot.png)
- Samtools tview - genome-visualization/tview.png)
- SvABA - genome-visualization/svaba.png)
- VizAln (from HipSTR) - genome-visualization/hipstr.png)
- Anvio
- BioCircos.js - genome-visualization/biocircos.png)
- Circleator - genome-visualization/circleator.png)
- circlize - genome-visualization/circlize.jpeg)
- Circos - genome-visualization/circos.png)
- CircosJS - genome-visualization/circosjs.png)
- DNAPlotter - genome-visualization/dnaplotter.jpg)
- GenomeProjector - genome-visualization/glanguage.jpg)
- JupiterPlot - genome-visualization/jupiterplot.png)
- OGDRAW - genome-visualization/ogdraw.png)
- Gview - genome-visualization/gview.png)
- RegulomeExplorer - genome-visualization/cancerregulome.png)
- CGView - genome-visualization/cgview.png)
- pyCircos - genome-visualization/pycircos.png)
- seqviz - genome-visualization/seqviz.png)
- ApE (a plasmid editor) - genome-visualization/aplasmideditor.png)
- Chopchop - genome-visualization/chopchop.png)
- Apollo - genome-visualization/apollo.jpg)
- D3GB - genome-visualization/d3gb.png)
- DNASkittle - genome-visualization/dnaskittle.png)
- EaSeq - genome-visualization/easeq.png)
- FluentDNA - genome-visualization/fluentdna.jpeg)
- Gnomad browser - genome-visualization/gnomad.png)
- IslandViewer and IslandPlot - genome-visualization/islandplot.png)
- MagicViewer - genome-visualization/magicviewer.jpeg)
- Panoptes - genome-visualization/panoptes.png)
- MapView - genome-visualization/mapview.jpg)
- NGB - genome-visualization/ngb.png)
- SeqCover - genome-visualization/seqcover.png)
- SEQing - genome-visualization/seqing.png)
- SFARI - genome-visualization/sfari.jpg)
- Short read assembly browser - genome-visualization/short_read_assembly_browser.png)
- SNPitty - genome-visualization/snpitty.jpg)
- Staden - genome-visualization/staden.png)
- TASUKE - genome-browser https://tasuke.dna.affrc.go.jp/) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/tasuke.png)
- UGENE - genome-visualization/ugene.png)
- Varsome - genome-visualization/varsome.png)
- Vials
- wasm bigwig demo browser - genome-visualization/wasm_bigwig.png)
- GTEX Locus browser - genome-visualization/gtex_locus.png)
- GWAS catalog browser - genome-visualization/gwascatalog.png)
- Human genome dating - genome-visualization/human_genome_dating.png)
- PopSV - genome-visualization/popsv.png)
- SWAV - genome-visualization/swav.png)
- Haploview - genome-visualization/haploview.png)
- Icarus QUAST - genome-visualization/icarus.png)
- BigTop - genome-visualization/bigtop.png)
- Cylindrical alignment app - genome-visualization/cylindrical_alignment_viewer.png)
- sockeye - genome-visualization/sockeye.jpg)
- spinteny - genome-visualization/spinteny.png)
- Chip Monk - genome-visualization/chipmonk.png)
- Chipster - tutorial.pdf) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/chipster.jpg)
- cisGenome Browser - genome-visualization/cisgenome.png)
- Epilogos - genome-visualization/epilogos.jpg)
- Epiviz - genome-visualization/epiviz.png)
- HiPiler - genome-visualization/hipiler.png)
- Juicebox - genome-visualization/juicebox.jpg)
- Juicebox.js - genome-visualization/juiceboxjs.jpg)
- Peax - genome-visualization/peax.png)
- eweitz/Ideogram - genome-visualization/eweitz_ideogram.png)
- Ideogram - genome-visualization/rcollins_ideogram.png)
- Ideoplot
- karyoploteR - genome-visualization/karyoploter.png)
- KaryotypeSVG - genome-visualization/karyotypesvg.png)
- NCBI Genome Decoration - genome-visualization/ncbi_genome_decoration.png)
- UCSC Genome Graphs - genome-visualization/ucsc_genome_graph.png)
- genomegraphs - genome-visualization/genomegraphs.png)
- IdeoViz - genome-visualization/ideoviz.png)
- Flash Gviewer - genome-visualization/flashgviewer.png)
- Ideogram viewer - genome-visualization/ideogramviewer.png)
- chromPlot - genome-visualization/chromplot.png)
- PhenoGram - genome-visualization/phenogram.png)
- RIdeogram - genome-visualization/rideogram.png)
- Pan-Tetris - genome-visualization/pantetris.png)
- Panacaea - genome-visualization/panacaea.png)
- Panache - genome-visualization/panache.png)
- panX - genome-visualization/panx.jpeg)
- RPAN (3kricedb) - genome-visualization/rpan.png)
- PGAP-X - genome-visualization/pgapx.png)
- PGV - genome-visualization/pgv.png)
- Phandango - genome-visualization/phandango.png)
- Protael - genome-visualization/protael.png)
- ProteinPaint - genome-visualization/proteinpaint.png)
- pViz - genome-visualization/pviz.jpg)
- Aquaria - genome-visualization/aquaria.png)
- nightingale/protvista - genome-visualization/nightingale.png)
- IBS (Illustrator for Biological Sequences) - genome-visualization/ibs.jpg)
- PFAM generate_graphic - genome-visualization/pfam.png)
- Prosite/MyDomains - genome-visualization/prosite.png)
- UCSC Xena - genome-visualization/xena.png)
- VIVA - genome-visualization/viva.png)
- REPAVER - genome-visualization/repaver.jpg)
- GraphAlignmentViewer - genome-visualization/graphalignmentviewer.png)
- REViewer - genome-visualization/reviewer.png)
- Internet Contig Explorer - genome-visualization/internet_contig_explorer.jpg)
- ALVIS (chimeric alignment viewer) - genome-visualization/alvis_chimeric.png)
- vcfR - genome-visualization/vcfr.png)
- NanoMethViz - genome-visualization/nanomethviz.png)
- AnnoJ - browser/) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/annoj.png)
- modbamtools - genome-visualization/modbamtools.png)
- Nextclade - genome-visualization/nextclade.png)
- Gingr - genome-visualization/gingr.png)
- methylartist - genome-visualization/methylartist.png)
- vega - genome-visualization/vega.png)
- MIRA - genome-visualization/mira.png)
- wiggleplotr - genome-visualization/wiggleplotr.png)
- Trackplot - genome-visualization/trackplot.png)
- splicejam - genome-visualization/splicejam.png)
- Slinker - genome-visualization/slinker.png)
- Plotgardener - genome-visualization/plotgardener.png)
- gcMapExplorer - genome-visualization/gcmapexplorer.png)
- SequenceServer - genome-visualization/sequenceserver.png)
- Consed - genome-visualization/consed.png)
- fineSTRUCTURE aka ChromoPainter - genome-visualization/finestructure.png)
- MOSAIC - genome-visualization/mosaic.png)
- snpit - genome-visualization/snpit.png)
- Awesome Bioinformatics
- Genocat
- awesome-biological-visualizations
Programming Languages
Keywords
visualization
17
bioinformatics
14
genomics
6
javascript
5
genomics-visualization
5
data-visualization
5
ggplot2
3
comparative-genomics
3
genetics
3
cancer-genomics
3
biology
3
svg
3
r
3
dotplot
3
mummer
2
ggplot-extension
2
rna-seq
2
data-science
2
big-data
2
karyotype
2
python
2
d3js
2
phylogenetic-trees
2
transcriptomics
2
rstats
2
cancer
2
c-plus-plus
2
genome-viewer
2
genome-browser
2
igv-like
2
multiple-sequence-alignment
2
circos
2
synthetic-biology
2
gwas
2
awesome
2
awesome-list
2
dynamic-programming
1
biological-data
1
vcf
1
synteny
1
sv
1
structure-variation
1
snp
1
read-mapping
1
java
1
perl
1
microbial-genomics
1
ember
1
emberjs
1
express
1