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https://github.com/TickingClock1992/RIdeogram
https://github.com/TickingClock1992/RIdeogram
Last synced: 4 months ago
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- Host: GitHub
- URL: https://github.com/TickingClock1992/RIdeogram
- Owner: TickingClock1992
- Created: 2018-12-12T13:27:07.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2020-09-22T06:28:03.000Z (almost 4 years ago)
- Last Synced: 2023-10-20T23:29:13.524Z (9 months ago)
- Language: R
- Size: 14.9 MB
- Stars: 136
- Watchers: 5
- Forks: 23
- Open Issues: 21
-
Metadata Files:
- Readme: README.md
Lists
- repo-5916-awesome-genome-visualization - RIdeogram - genome-visualization/rideogram.png) (Ideogram)
- awesome-genome-visualization - RIdeogram
README
# RIdeogram: Drawing SVG Graphics to Visualize and Map Genome-Wide Data on Idiograms
`RIdeogram` is a R package to draw SVG graphics to visualize and map genome-wide data on idiograms (Scalable Vector Graphics http://tutorials.jenkov.com/svg/index.html).
# Installation
To install package from Github, you need to install the `devtools` package first
```
install.packages("devtools")
library(devtools)
```
Then, you can install the package `RIdeogram`
```
devtools::install_github('TickingClock1992/RIdeogram')
```
To install the package `RIdeogram` from CRAN
```
install.packages("RIdeogram")
```
# Citation
Hao Z, Lv D, Ge Y, Shi J, Weijers D, Yu G, Chen J. 2020. RIdeogram: drawing SVG graphics to visualize and map genome-wide data on the idiograms. PeerJ Comput. Sci. 6:e251 http://doi.org/10.7717/peerj-cs.251
# Usage
https://cran.r-project.org/web/packages/RIdeogram/vignettes/RIdeogram.html
# Maintainer
Zhaodong Hao
Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education of China
College of Forestry, Nanjing Forestry University
Nanjing 210037, China
https://github.com/TickingClock1992
# THANKS
Welcome to any suggestions and discussions.