https://github.com/nspies/genomeview

An extensible python-based genomics visualization engine
https://github.com/nspies/genomeview

Last synced: 4 months ago
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An extensible python-based genomics visualization engine

• Host: GitHub
• URL: https://github.com/nspies/genomeview
• Owner: nspies
• License: mit
• Created: 2017-07-14T17:03:16.000Z (almost 7 years ago)
• Default Branch: main
• Last Pushed: 2023-08-11T02:22:27.000Z (11 months ago)
• Last Synced: 2024-01-09T00:54:43.015Z (6 months ago)
• Language: Python
• Homepage:
• Size: 6.03 MB
• Stars: 136
• Watchers: 10
• Forks: 20
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Lists

• awesome-genome-visualization - GenomeView
• repo-5916-awesome-genome-visualization - GenomeView - genome-visualization/genomeview.png) (Static)

README

        
## genomeview - a python module for visualizing genomic data

[![ci](https://github.com/nspies/genomeview/actions/workflows/ci.yml/badge.svg)](https://github.com/nspies/genomeview/actions/workflows/ci.yml)

[![PyPI](https://img.shields.io/pypi/v/genomeview.svg)](https://pypi.org/project/genomeview/)

[![Docs](https://readthedocs.org/projects/genomeview/badge/?version=latest)](https://genomeview.readthedocs.io/en/latest/?badge=latest)

[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/nspies/genomeview/HEAD?labpath=examples%2Fexamples.ipynb)

![genomeview example image](https://raw.githubusercontent.com/nspies/genomeview/master/docs/images/overview.svg?sanitize=true)

Example [jupyter notebook](https://nbviewer.org/github/nspies/genomeview/blob/main/examples/examples.ipynb) with visualizations inline.

See the [documentation on read-the-docs](http://genomeview.readthedocs.io/en/latest/index.html) for installation and usage

Try it on [mybinder](https://mybinder.org/v2/gh/nspies/genomeview/HEAD?labpath=examples%2Fexamples.ipynb)