https://cmdcolin.github.io/graphgenomeviewer/

Web based viewer for small to medium GFA format files
https://cmdcolin.github.io/graphgenomeviewer/

Last synced: 4 months ago
JSON representation

Web based viewer for small to medium GFA format files

• Host: GitHub
• URL: https://cmdcolin.github.io/graphgenomeviewer/
• Owner: cmdcolin
• License: mit
• Created: 2020-07-22T20:28:51.000Z (almost 4 years ago)
• Default Branch: master
• Last Pushed: 2023-12-06T01:50:07.000Z (7 months ago)
• Last Synced: 2024-03-17T05:53:23.712Z (4 months ago)
• Language: TypeScript
• Homepage: https://cmdcolin.github.io/graphgenomeviewer/
• Size: 9.93 MB
• Stars: 7
• Watchers: 2
• Forks: 1
• Open Issues: 8
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Lists

• repo-5916-awesome-genome-visualization - graphgenomeviewer - genome-visualization/graphgenomeviewer.png) (Graph)
• awesome-genome-visualization - graphgenomeviewer

README

        
# graphgenomeviewer

This repo provides an NPM module https://www.npmjs.com/package/graphgenomeviewer

which is a react component and a demo instance that shows some demo files in a

create-react-app instance

See the lib [README](lib/README.md) for details on using the NPM module

## Demo

![](img/1.png)

See https://cmdcolin.github.io/graphgenomeviewer/

## Developing locally

In one shell

```

cd lib

yarn watch

```

In another

```

cd app

yarn start

```

## Deploy lib to NPM

```

cd lib

yarn publish

```

## Deploy app to GitHub pages

```

cd app

yarn deploy

```

## File type support

This app currently supports GFA1 and a subset of GFA2. It does not fully attempt

to resolve the GFA2 edge spec with dovetails, but makes a basic attempt to at

least link the nodes specified by GFA2 edges

## Notes

Project started during BCC2020 pangenome virtual conference CoFest hackathon

team. Thanks to everyone! See [CREDITS](CREDITS.md)