https://github.com/chfi/purescript-genetics-browser

Purescript-based genome and genetics browser
https://github.com/chfi/purescript-genetics-browser

Last synced: 4 months ago
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Purescript-based genome and genetics browser

• Host: GitHub
• URL: https://github.com/chfi/purescript-genetics-browser
• Owner: chfi
• License: mit
• Created: 2017-03-22T09:42:51.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2021-06-16T08:19:01.000Z (about 3 years ago)
• Last Synced: 2024-01-17T03:17:38.073Z (6 months ago)
• Language: PureScript
• Size: 9.75 MB
• Stars: 5
• Watchers: 2
• Forks: 3
• Open Issues: 5
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Lists

• repo-5916-awesome-genome-visualization - PureScript genetics browser - genome-visualization/purescript.png) (GWAS)
• awesome-genome-visualization - PureScript genetics browser

README

        
# Genetics Browser

A working demo of the genome browser can be found [here](https://chfi.github.io/genetics-browser-example/track/).

You need npm 5, as well as the Purescript compiler and build tools. The latter

can be installed with npm:

```shell

npm install -g purescript@"== 0.12.5" spago parcel

```

The browser can be built for production using make, into `/dist/index.js`:

``` shell

make build

```

That produces `./dist/index.js`. Opening `./dist/index.html`

should now display the genome browser.

`index.js` in the root folder can be changed to modify the way the

browser functions are exposed. By default, the PureScript module

`Genetics.Browser.UI` is bound to the global JS variable

`GenomeBrowser`.

For development, start the parcel server with `make start` (or `parcel

index.html`), and compile the PureScript modules with either `spago

build`, start a spago build server with `spago build -w`, or start the

compiler using your IDE.