https://github.com/orangeSi/GSSplayground

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
https://github.com/orangeSi/GSSplayground

bam bioinformatics comparative-genomics crosslink depth genecluster genome-viewer genomes igv-like indel long-reads read-mapping snp structure-variation sv svg synteny transcriptomics vcf visualization

Last synced: 4 months ago
JSON representation

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

• Host: GitHub
• URL: https://github.com/orangeSi/GSSplayground
• Owner: orangeSi
• Created: 2018-03-10T18:07:36.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2020-07-12T12:23:42.000Z (almost 4 years ago)
• Last Synced: 2023-10-19T16:43:46.527Z (9 months ago)
• Topics: bam, bioinformatics, comparative-genomics, crosslink, depth, genecluster, genome-viewer, genomes, igv-like, indel, long-reads, read-mapping, snp, structure-variation, sv, svg, synteny, transcriptomics, vcf, visualization
• Language: HTML
• Homepage:
• Size: 148 MB
• Stars: 27
• Watchers: 5
• Forks: 7
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

Lists

• repo-5916-awesome-genome-visualization - GSSPlayground - genome-visualization/gssplayground.png) (Comparative)
• awesome-genome-visualization - GSSPlayground