https://jameshadfield.github.io/phandango/

an interactive viewer for populations of bacterial genomes linked by a phylogeny
https://jameshadfield.github.io/phandango/

Last synced: 4 months ago
JSON representation

an interactive viewer for populations of bacterial genomes linked by a phylogeny

• Host: GitHub
• URL: https://jameshadfield.github.io/phandango/
• Owner: jameshadfield
• License: mit
• Created: 2015-02-04T14:26:17.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2023-10-17T00:57:58.000Z (9 months ago)
• Last Synced: 2023-10-26T06:58:26.106Z (8 months ago)
• Language: JavaScript
• Homepage: http://phandango.net
• Size: 14.3 MB
• Stars: 104
• Watchers: 11
• Forks: 26
• Open Issues: 53
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Lists

• repo-5916-awesome-genome-visualization - Phandango - genome-visualization/phandango.png) (Pangenome)
• awesome-genome-visualization - Phandango

README

        


* ### Load [phandango.net (including examples)](http://phandango.net)

* ### [Wiki (help) Page](http://github.com/jameshadfield/phandango/wiki)

If you use phandango in a publication please cite [Hadfield _et al._, Bioinformatics (2017) ](https://doi.org/10.1093/bioinformatics/btx610) 🎉

If you would like your data to appear as one of the examples, [make a new issue](https://github.com/jameshadfield/phandango/issues/new) and i'll add it 👍

Designed and built by [James Hadfield](https://github.com/jameshadfield/) and [Simon Harris](mailto:[email protected]) at the [Wellcome Sanger Institute](https://www.sanger.ac.uk), Cambridge, U.K.

Domain name kindly supported by the Wellcome Sanger Institute.



### Developing 

This repo was built using a (now ancient) version of node & npm. 

The following conda environment works as of October 2023:

```

conda create --name phandango -c conda-forge nodejs=8

```

Hot reloading no longer works, and if you use VS-Code you need to prefix commands with `NODE_OPTIONS=""`