https://github.com/yeyixuan/UKBCaseFinder

A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).
https://github.com/yeyixuan/UKBCaseFinder

case-identify tool ukbiobank

Last synced: 4 months ago
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A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).

• Host: GitHub
• URL: https://github.com/yeyixuan/UKBCaseFinder
• Owner: yeyixuan
• Created: 2018-06-16T19:53:02.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2018-10-12T15:45:12.000Z (over 5 years ago)
• Last Synced: 2024-01-17T01:04:28.296Z (6 months ago)
• Topics: case-identify, tool, ukbiobank
• Language: R
• Homepage:
• Size: 9.77 KB
• Stars: 13
• Watchers: 0
• Forks: 4
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Lists

• awesome-uk-biobank - UKBCaseFinder - 10, ICD-9, OPCS or cancer histology) | (Derivation of variables / Electronic health records)

README

        
# UKBCaseFinder

A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).

Here we combine 3 data sources: hospital in-patient episode records (hesin), death records, and cancer records to identify all 

the patients and their earlist onset date.

# Installing UKBCaseFinder

To install the development version from github (the package devtools is required):

```

library(devtools)

install_github("yeyixuan/UKBCaseFinder")

```

Once installed, the package can be loaded using:

```

library(UKBCaseFinder)

```