Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
awesome-uk-biobank
A curated list of UK Biobank related resources
https://github.com/s-bell/awesome-uk-biobank
- Researcher login
- Data showcase
- DNAnexus Research Analysis Platform
- Twitter feed
- Genomics mailing list
- Neuroimaging mailing list
- Neale lab (4,203 phenotypes)
- PanUK Biobank (7,228 phenotypes)
- GeneAtlas (778 phenotypes)
- Global Biobank Engine (~3,800 phenotypes)
- UK Biobank TOPMed-imputed PheWeb (1,419 phenotypes)
- Lee lab (~1,400 phenotypes)
- MRC IEU (2,514 phenotypes)
- Genebass (4,529 phenotypes)
- AstraZeneca PheWAS portal (~15,500 binary and ~1,500 continuous phenotypes)
- Oxford Brain Imaging Genetics Server (~4,000 phenotypes)
- UNC School of Medicine GWAS summary statistics for brain imaging Phenotypes
- Sex-stratified GWAS of 530 phenotypes
- ExPheWas browser (1,746 phenotypes)
- GWAS summary statistics for 82 heart imaging traits
- Gene-based tests for 1,403 phecodes and 827 continuous phenotypes
- Rivas lab (35 blood and urine biomarkers)
- Nightingale Health NMR measures and their ratios in ~115,000 participants
- Mitochondrial PheWas
- 29 blood cell traits
- Telomere length
- 10 resting-state brain networks
- Nonsuicidal self-injury (NSSI)
- MRC IEU OpenGWAS
- PHESANT - pheWAS etc) in UK Biobank |
- createUKBphenome
- ukbb-srmed - reported medication data coding table with terms in both the Anatomical Therapeutic Chemical (ATC) classification system and in the British National Formulary (BNF) |
- ukbfrailty
- ukbiobank_lca_model_predictions
- ukb-biomarker-phenotypes - measured biomakers in primary care electronic health records |
- ukbb-ehr-data
- ukbbhelpr
- phemap - 10 terms and PheCodes for UK Biobank hospital electronic health records |
- UKBCaseFinder - 10, ICD-9, OPCS or cancer histology) |
- ukbcodes
- UKB.COVID19 - 19 data processing and risk factor association tests |
- ukbnmr
- CAHDbyECG
- NeuralCVD - based integration of polygenic and clinical information of a prediction model for 10 year risk of major adverse cardiac events) |
- UKB_bioage - based biological ageing in the UK Biobank |
- biobankAccelerometerAnalysis
- BiobankActivityCSF
- snake-ukb-accel
- axivity-ax3-tool
- UKBiobankKineticEnergyHarvesting - powered wearable devices' |
- ssl-wearables - supervised learning for wearables using the UK-Biobank (>700,000 person-days) |
- MoChA
- MT_UKB
- mt_PheWAS
- ddpop
- cnv-ukb
- ukbb-pytorch-dataloader
- go-bgen
- liftover_plink_beds - wide genotyping data from one reference build to another |
- ukb-phasing
- μ-PBWT - based light index enabling storage and use of UK Biobank scale genotype data on a commodity laptop |
- DNANexus_GRS
- ukb-brain-imaging
- tvb-ukbb
- qsm-pipeline
- XTRACT_atlases
- ukbiobank-spinalcord-csa - sectional area |
- brain-age
- slice2vol - to-Volume Registration for UK Biobank data |
- brain-sex
- PSMD - automated and easy-to-implement marker for cerebral small vessel disease based on diffusion tensor imaging, white matter tract skeletonization (as implemented in FSL-TBSS) and histogram analysis |
- ePVS quantification
- morpho-deepsulci
- ENIGMA-SULCI - SULCI working group that combines Freesurfer and BrainVISA to robuslty segment and label 123 sulci across the whole brain |
- adni_phenotypes
- generative_brain_controlnet
- ukbb_cardiac
- ukbb_lax_4ch - axis 4-chamber view cardiac MRI data sets |
- CardioRadiomics
- ukb-cardiac-mri
- cardiac-fractals
- ReCOH_pipeline
- ukbb-mri-sseg
- ukb-kidney-segmentation - segmentation-ukbb |
- UKBiobankDXAMRIPreprocessing
- AAC_scoring
- ukb_mimir - to-knee MRI |
- ukb_segmentation - Net segmentation of UK Biobank neck-to-knee body MRI |
- iliopsoas_muscle - scale analysis of iliopsoas muscle volumes in the UK Biobank |
- PDFF
- UKBB-GNC-Abdominal-Segmentation - based abdominal organ segmentation in UK Biobank |
- OCT-Converter
- VAMPIRE - automatic quantification of retinal vessel properties with large collections of fundus camera images |
- Retina-Seg
- UKB_RAP
- ukbtools
- ukbwranglr
- ukbwranglrextra - on functions for ukbwranglr |
- ukbwranglr_resources
- ukbREST
- ukbcc
- ukbm
- bulk-ukb
- UKBioPick - delimited phenotypic file (ukbxxxx.tab) |
- BiobankRead-Bash - process UK Biobank data |
- precimed-ukb
- UKBFetchbash
- ukbb-slicer
- R-ukbiobank
- ukbb_parser
- ukb_download_and_prep_template - processing steps when working with UK Biobank data |
- UKBiobank-Table-Conversion - friendly data tables |
- ukbpheno
- ukb_healthoutcomes_db - level health outcomes in a SQLite database |
- UKBWeightsFinal
- ukb-rap-tools
- UKBBcleanR - to-event analyses |
- ukbiobank-loaders
- Rdna-nexus
- UK-Biobank-scraper - data from the UK Biobank website and return a json object |
- UKBscrape - in dictionary for the field IDs. Also checks which variables are not included in your application compared to the website |
- ukbschemas
- docker-ukbiobank-utils
- tofu
- BBS
Programming Languages
Keywords
ukbiobank
11
uk-biobank
9
biobank
6
r
5
pytorch
3
mri
3
rstats
2
healthcare
2
time-to-event
2
r-package
2
uk
2
ehr
2
axivity
2
bioinformatics
2
genetics
2
electronic-health-records
2
ukb
2
deep-learning
2
gwas
2
tool
1
cardiovascular-disease
1
case-identify
1
phecode
1
icd-10
1
clinical-terminologies
1
texture-analysis
1
svm-classifier
1
pytorch-lightning
1
risk-modeling
1
survival-analysis
1
actigraph
1
activity-tracker
1
fitness-tracker
1
geneactiv
1
machine-learning
1
ax3
1
cplusplus-11
1
accelerometer
1
bids
1
data-management
1
reproducibility
1
reproducible-research
1
reproducible-science
1
dicom
1
e2e
1
fda
1
fundus
1
heidelberg
1
oct
1
python
1