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https://github.com/spiros/docker-ukbiobank-utils
Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch
https://github.com/spiros/docker-ukbiobank-utils
Last synced: 4 months ago
JSON representation
Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch
- Host: GitHub
- URL: https://github.com/spiros/docker-ukbiobank-utils
- Owner: spiros
- License: apache-2.0
- Created: 2019-02-21T16:51:53.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2021-07-27T08:03:52.000Z (almost 3 years ago)
- Last Synced: 2024-01-17T01:10:16.306Z (6 months ago)
- Language: Dockerfile
- Homepage: http://denaxaslab.org
- Size: 17.6 KB
- Stars: 10
- Watchers: 2
- Forks: 5
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Lists
- awesome-uk-biobank - docker-ukbiobank-utils
README
# ukbiobank utils
[](https://hub.docker.com/repository/docker/spiros123/ukbiobank-utils) [](https://hub.docker.com/repository/docker/spiros123/ukbiobank-utils) [](https://microbadger.com/images/spiros123/ukbiobank-utils "Get your own image badge on microbadger.com")
## About
This is a repo to hold a Docker image for UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv
By default, UK Biobank will only [provide binaries](http://biobank.ctsu.ox.ac.uk/crystal/download.cgi) for Linux and Windows for their utilities.
This Docker image will allow you to run them anywhere you want as long as you have Docker (i.e. OS X).
## Build
``` bash
docker build -t ukbiobank-utils .
```
## Run
``` bash
# Decode
docker run -v $PWD:/data --rm -it spiros123/ukbiobank-utils ukbunpack /data/ukbXXXXXX.enc /data/
# Convert to csv/r/docs/etc
docker run -v $PWD:/data --rm -it spiros123/ukbiobank-utils ukbconv /data/ukbXXXXX.enc_ukb csv
```