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https://bernatgel.github.io/karyoploter_tutorial/

Examples on how to use the karyoploteR R/Bioconductor package
https://bernatgel.github.io/karyoploter_tutorial/

bioconductor bioinformatics data-visualization genomics-visualization plotting-in-r rstats tutorial

Last synced: about 1 month ago
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Examples on how to use the karyoploteR R/Bioconductor package

Host: GitHub
URL: https://bernatgel.github.io/karyoploter_tutorial/
Owner: bernatgel
Created: 2017-01-17T10:10:21.000Z (almost 8 years ago)
Default Branch: master
Last Pushed: 2023-02-03T11:49:10.000Z (almost 2 years ago)
Last Synced: 2024-08-04T11:01:13.663Z (5 months ago)
Topics: bioconductor, bioinformatics, data-visualization, genomics-visualization, plotting-in-r, rstats, tutorial
Size: 20.4 MB
Stars: 10
Watchers: 2
Forks: 4
Open Issues: 0
Metadata Files:
- Readme: README.md

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README

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# Examples of plots created with karyoploteR

This repo contains the code to build a github.io page with a tutorial and a number of small examples on how to use the Bioconductor package [karyoploteR](http://bioconductor.org/packages/karyoploteR)
to create karyoplots, that is, the chromosome ideograms accompained by any arbitrary
data.

They can be found at [https://bernatgel.github.io/karyoploter_tutorial/](https://bernatgel.github.io/karyoploter_tutorial/)

![Multiple Data Types Figure](https://raw.githubusercontent.com/bernatgel/karyoploter_tutorial/master/docs/Examples/MultipleDataTypes/images/Figure-1.png "Multiple Data Types")

The examples are written in RMarkdown, processed with knitr and published by Jekyll on the Github Pages platform. This code could be easily adapted to create examples pages for other packages if needed.

***

For additional documentation on karyoploteR, please refer to the [vignette](http://bioconductor.org/packages/devel/bioc/vignettes/karyoploteR/inst/doc/karyoploteR.pdf) and the [reference manual](http://bioconductor.org/packages/devel/bioc/manuals/karyoploteR/man/karyoploteR.pdf)