Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://bids-standard.github.io/bids-examples/
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
https://bids-standard.github.io/bids-examples/
bids data-standards dataset neuroimaging standards
Last synced: about 1 month ago
JSON representation
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
- Host: GitHub
- URL: https://bids-standard.github.io/bids-examples/
- Owner: bids-standard
- Created: 2015-09-25T21:41:26.000Z (about 9 years ago)
- Default Branch: master
- Last Pushed: 2024-11-05T14:49:26.000Z (about 1 month ago)
- Last Synced: 2024-11-05T14:50:29.618Z (about 1 month ago)
- Topics: bids, data-standards, dataset, neuroimaging, standards
- Language: MATLAB
- Homepage: http://bids-standard.github.io/bids-examples/
- Size: 97.6 MB
- Stars: 174
- Watchers: 34
- Forks: 135
- Open Issues: 28
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
Awesome Lists containing this project
- awesome-bids - BIDS examples
README
[](https://github.com/bids-standard/bids-examples/actions)
The content of this repository can also be viewed here:
**https://bids-standard.github.io/bids-examples/**
# bids-examples
This repository contains a set of
[BIDS-compatible](https://bids.neuroimaging.io/) datasets with **empty raw data
files**. These datasets can be useful to:
1. write lightweight software tests
1. serve as an example on how a BIDS dataset can be structured
**ALL RAW DATA FILES IN THIS REPOSITORY ARE EMPTY!**
However for some of the data, the headers containing the metadata are still
intact. (For example the NIfTI headers for `.nii` files, the BrainVision data
headers for `.vhdr` files, or the OME-XML headers for `.ome.tif` files.)
Headers are intact for the following datasets:
- `synthetic`
- Most EEG or iEEG data in BrainVision format (e.g., `eeg_matchingpennies`)
## Validating BIDS examples
The next three sections mention a few details on how the `bids-examples` can be
validated using `bids-validator`.
For general information on the `bids-validator`, including installation and
usage, see the
[bids-validator README file](https://github.com/bids-standard/bids-validator#quickstart).
### Validating individual examples
Since all raw data files in this repository are empty, the `bids-validator` must
to be configured to not report empty data files as errors. (See more on
bids-validator configuration in the
[bids-validator README](https://github.com/bids-standard/bids-validator#configuration).)
Just run the validator as follows (using the `eeg_matchingpennies` dataset as an
example, and assuming you are in a command line at the root of the
`bids-examples` repository):
`bids-validator eeg_matchingpennies --config.ignore=99`
The `--config.ignore=99` "flag" tells the bids-validator to ignore empty data
files rather than to report the "empty file" error .
For datasets that contain NIfTI `.nii` files, you also need to add the
`ignoreNiftiHeaders` flag to the `bids-validator` call, to suppress the issue
that NIfTI headers are not found.
For example:
`bids-validator ds003 --config.ignore=99 --ignoreNiftiHeaders`
### Validating all examples
If you want to validate all examples in one go, you can use the `run_tests.sh`
script that is provided in this repository. This script makes use of the
`bidsconfig.json` configuration file for the `bids-validator`, and appropriately
handles some special case examples (see
[Validator Exceptions](#validator-exceptions)).
Simply run `./run_tests.sh` in a command line from the root of the
`bids-examples` repository.
### Validator exceptions
Some datasets may include a custom `.bids-validator-config.json` to ignore
errors generated from idiosyncrasies of the datasets as they existed on
creation.
| name | errors ignored |
| ------------- | ------------------------------------------------------------------------------------------------------------------------------ |
| genetics_ukbb | SliceTiming values for tasks is larger than given TR, EchoTime1 and EchoTime2 are not provided for any of the phasediff files. |
Other datasets may include a `.SKIP_VALIDATION` file, to skip the validation
with the continuous integration service. This is useful for datasets that
_cannot_ pass at the moment due to lack of coverage in the
[bids-validator](https://github.com/bids-standard/bids-validator).
Note however, that the `.SKIP_VALIDATION` file only impacts the continuous
integration service, or validation when run with the `run_tests.sh` script (see
[Validating all examples](#validating-all-examples)). This file does **not**
have any effect when running `bids-validator` from custom scripts, the web-based
validator, docker, or from the command line.
| name | why skipped |
| ----------------- | ------------------------------------------------------ |
| ds000001-fmriprep | lack of coverage for "derivatives" in `bids-validator` |
## Contributing
We are happy to receive contributions in the form of:
- updates to existing examples, or the [dataset index](#dataset-index)
- new examples
- only if they cover aspects that are currently not covered by existing
examples
- only if a maintainer can be found for this dataset
- suggestions on how to improve the bids-examples repository
For more information, please see our
[CONTRIBUTING.md](./CONTRIBUTING.md)
file or open a
[new GitHub Issue](https://github.com/bids-standard/bids-examples/issues/new)
and ask us directly.
## Dataset index
### ASL
| name | description | datatypes | suffixes | link to full data | maintained by |
|:--------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------|:-----------------|:------------------------------------------|:------------------------------|:-----------------------------------------|
| [2d_mb_pcasl](https://github.com/bids-standard/bids-examples/tree/master/2d_mb_pcasl) | Siemens 2D MultiBand Multi-delay PCASL (m0 and noRF included within timeseries) | anat, fmap, perf | T1w, asl, aslcontext, epi | [link](https://osf.io/xrkc4/) | [@aptinis](https://github.com/aptinis) |
| [asl001](https://github.com/bids-standard/bids-examples/tree/master/asl001) | T1w, asl (GE, PCASL, 3D_SPIRAL), m0scan within timeseries | anat, perf | T1w, asl, aslcontext, asllabeling | [link](https://osf.io/yru2q/) | [@patsycle](https://github.com/patsycle) |
| [asl002](https://github.com/bids-standard/bids-examples/tree/master/asl002) | T1w, asl (Philips, PCASL, 2D_EPI), m0scan as separate scan | anat, perf | T1w, asl, aslcontext, asllabeling, m0scan | [link](https://osf.io/yru2q/) | [@patsycle](https://github.com/patsycle) |
| [asl003](https://github.com/bids-standard/bids-examples/tree/master/asl003) | T1w, asl (Siemens, PASL, multiTI), M0scan as separate scan | anat, perf | T1w, asl, aslcontext, asllabeling, m0scan | [link](https://osf.io/yru2q/) | [@patsycle](https://github.com/patsycle) |
| [asl004](https://github.com/bids-standard/bids-examples/tree/master/asl004) | T1w, asl (Siemens, PCASL, multiPLD with pepolar), m0scan separate scans with pepolar approach | anat, fmap, perf | T1w, asl, aslcontext, asllabeling, m0scan | [link](https://osf.io/yru2q/) | [@patsycle](https://github.com/patsycle) |
| [asl005](https://github.com/bids-standard/bids-examples/tree/master/asl005) | T1w, asl (Siemens, PCASL, singleTI, 3D_GRASE), m0scan as separate scan | anat, perf | T1w, asl, aslcontext, asllabeling, m0scan | [link](https://osf.io/yru2q/) | [@patsycle](https://github.com/patsycle) |
### Behavioral
| name | description | datatypes | suffixes | link to full data | maintained by |
|:------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------|:--------------------------------|:---------------------------------------------------------------------------------------------------------------|:-------------------------------------------------|:-------------------------------------------|
| [ds000117](https://github.com/bids-standard/bids-examples/tree/master/ds000117) | A multi-subject, multi-modal human neuroimaging dataset of 19 subjects on a MEG visual task | anat, beh, dwi, fmap, func, meg | FLASH, T1w, bold, channels, coordsystem, dwi, events, headshape, magnitude1, magnitude2, meg, phasediff, scans | [link](https://openneuro.org/datasets/ds000117/) | [@RikHenson](https://github.com/RikHenson) |
| [eeg_ds003645s_hed_demo](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_demo) | Shows usage of Hierarchical Event Descriptor (HED) in .tsv files | anat, beh, eeg, micr, motion | KSSSleep, SPIM, beh, channels, coordsystem, defacemask, eeg, electrodes, events, motion, photo, samples, scans | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |
| [synthetic](https://github.com/bids-standard/bids-examples/tree/master/synthetic) | A synthetic dataset | anat, beh, func | T1w, beh, bold, events, physio, scans, sessions, stim | n/a | [@effigies](https://github.com/effigies) |
### EEG
| name | description | datatypes | suffixes | link to full data | maintained by |
|:------------------------------------------------------------------------------------------------------------------|:-------------------------------------------------------------------------------------------------------------------|:------------|:-----------------------------------------------|:------------------------------------------------|:-----------------------------------------------|
| [eeg_cbm](https://github.com/bids-standard/bids-examples/tree/master/eeg_cbm) | Rest EEG. European Data Format (.edf) | eeg | channels, eeg, events, scans | n/a | [@cpernet](https://github.com/cpernet) |
| [eeg_ds003645s_hed_library](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_library) | HED annotation using HED library vocabularies (schema). | eeg | channels, eeg, events | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |
| [eeg_face13](https://github.com/bids-standard/bids-examples/tree/master/eeg_face13) | Deconstructing the early visual electrocortical response to face and house stimuli. EDF format | eeg | channels, coordsystem, eeg, electrodes, events | n/a | [@andesha](https://github.com/andesha) |
| [eeg_matchingpennies](https://github.com/bids-standard/bids-examples/tree/master/eeg_matchingpennies) | Offline data of BCI experiment decoding left vs. right hand movement. BrainVision data format (.eeg, .vhdr, .vmrk) | eeg | channels, eeg, events | [link](https://doi.org/10.17605/OSF.IO/CJ2DR) | [@sappelhoff](https://github.com/sappelhoff) |
| [eeg_rishikesh](https://github.com/bids-standard/bids-examples/tree/master/eeg_rishikesh) | Mind wandering experiment. EEG data in Biosemi (.bdf) format | eeg | channels, eeg, events | [link](https://openneuro.org/datasets/ds001787) | [@arnodelorme](https://github.com/arnodelorme) |
### DWI
| name | description | datatypes | suffixes | link to full data | maintained by |
|:------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------|:--------------------------------|:---------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------|:-------------------------------------------|
| [ds000117](https://github.com/bids-standard/bids-examples/tree/master/ds000117) | A multi-subject, multi-modal human neuroimaging dataset of 19 subjects on a MEG visual task | anat, beh, dwi, fmap, func, meg | FLASH, T1w, bold, channels, coordsystem, dwi, events, headshape, magnitude1, magnitude2, meg, phasediff, scans | [link](https://openneuro.org/datasets/ds000117/) | [@RikHenson](https://github.com/RikHenson) |
| [ds114](https://github.com/bids-standard/bids-examples/tree/master/ds114) | multiple tasks, multiple runs | anat, dwi, func | T1w, bold, dwi, events | [link](https://openneuro.org/datasets/ds000114/versions/1.0.1) | n/a |
| [dwi_deriv](https://github.com/bids-standard/bids-examples/tree/master/dwi_deriv) | exemplifies the storage of diffusion MRI derivates that may be generated on the Siemens XA platform. | dwi | dwi | n/a | n/a |
| [eeg_rest_fmri](https://github.com/bids-standard/bids-examples/tree/master/eeg_rest_fmri) | Resting state with simultaneous fMRI. BrainVision data format (.eeg, .vhdr, .vmrk) | anat, dwi, eeg, func | T1w, bold, dwi, eeg | n/a | [@cpernet](https://github.com/cpernet) |
| [genetics_ukbb](https://github.com/bids-standard/bids-examples/tree/master/genetics_ukbb) | multiple tasks, T1w, DTI, BOLD, genetic info | anat, dwi, func | FLAIR, T1w, bold, dwi, events, info | n/a | [@cpernet](https://github.com/cpernet) |
### iEEG
| name | description | datatypes | suffixes | link to full data | maintained by |
|:------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------|:-----------------------|:-----------------------------------------------------------------------|:----------------------------------------------------------------------------|:---------------------------------------------|
| [ieeg_epilepsyNWB](https://github.com/bids-standard/bids-examples/tree/master/ieeg_epilepsyNWB) | multiple sessions, tutorial — derivative dataset of `ieeg_epilepsy` showcasing the NWB file format alternative | anat, ieeg | T1w, channels, coordsystem, electrodes, events, ieeg, scans | [link](https://neuroimage.usc.edu/bst/getupdate.php?s=tutorial_epimap_bids) | [@TheChymera](https://github.com/TheChymera) |
| [ieeg_epilepsy](https://github.com/bids-standard/bids-examples/tree/master/ieeg_epilepsy) | multiple sessions, tutorial | anat, ieeg | T1w, channels, coordsystem, electrodes, events, ieeg, scans | [link](https://neuroimage.usc.edu/bst/getupdate.php?s=tutorial_epimap_bids) | [@ftadel](https://github.com/ftadel) |
| [ieeg_epilepsy_ecog](https://github.com/bids-standard/bids-examples/tree/master/ieeg_epilepsy_ecog) | multiple sessions, tutorial | anat, ieeg | T1w, channels, coordsystem, electrodes, events, ieeg, photo, scans | [link](https://neuroimage.usc.edu/bst/getupdate.php?s=sample_ecog) | [@ftadel](https://github.com/ftadel) |
| [ieeg_filtered_speech](https://github.com/bids-standard/bids-examples/tree/master/ieeg_filtered_speech) | recordings of three seizures | ieeg | channels, coordsystem, electrodes, events, ieeg, photo | n/a | [@choldgraf](https://github.com/choldgraf) |
| [ieeg_motorMiller2007](https://github.com/bids-standard/bids-examples/tree/master/ieeg_motorMiller2007) | Cue-based hand & tongue movement data | ieeg | channels, coordsystem, electrodes, events, ieeg | n/a | [@dorahermes](https://github.com/dorahermes) |
| [ieeg_visual](https://github.com/bids-standard/bids-examples/tree/master/ieeg_visual) | Stimulus dependence of gamma oscillations in human visual cortex | anat, ieeg | T1w, channels, coordsystem, electrodes, events, ieeg | n/a | [@dorahermes](https://github.com/dorahermes) |
| [ieeg_visual_multimodal](https://github.com/bids-standard/bids-examples/tree/master/ieeg_visual_multimodal) | n/a | anat, fmap, func, ieeg | T1w, bold, channels, coordsystem, electrodes, epi, events, ieeg, sbref | n/a | [@irisgroen](https://github.com/irisgroen) |
| [xeeg_hed_score](https://github.com/bids-standard/bids-examples/tree/master/xeeg_hed_score) | EEG and iEEG data with annotations of artifacts, seizures and modulators using HED-SCORE | anat, eeg, ieeg | T1w, channels, coordsystem, eeg, electrodes, events, ieeg | n/a | [@dorahermes](https://github.com/dorahermes) |
### HED
| name | description | datatypes | suffixes | link to full data | maintained by |
|:------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------|:-----------------------------|:---------------------------------------------------------------------------------------------------------------|:------------------------------------------------|:---------------------------------------------|
| [eeg_ds003645s_hed_demo](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_demo) | Shows usage of Hierarchical Event Descriptor (HED) in .tsv files | anat, beh, eeg, micr, motion | KSSSleep, SPIM, beh, channels, coordsystem, defacemask, eeg, electrodes, events, motion, photo, samples, scans | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |
| [eeg_ds003645s_hed_library](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_library) | HED annotation using HED library vocabularies (schema). | eeg | channels, eeg, events | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |
| [xeeg_hed_score](https://github.com/bids-standard/bids-examples/tree/master/xeeg_hed_score) | EEG and iEEG data with annotations of artifacts, seizures and modulators using HED-SCORE | anat, eeg, ieeg | T1w, channels, coordsystem, eeg, electrodes, events, ieeg | n/a | [@dorahermes](https://github.com/dorahermes) |
### MEG
| name | description | datatypes | suffixes | link to full data | maintained by |
|:--------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------|:--------------------------------|:---------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------|:-------------------------------------------|
| [ds000117](https://github.com/bids-standard/bids-examples/tree/master/ds000117) | A multi-subject, multi-modal human neuroimaging dataset of 19 subjects on a MEG visual task | anat, beh, dwi, fmap, func, meg | FLASH, T1w, bold, channels, coordsystem, dwi, events, headshape, magnitude1, magnitude2, meg, phasediff, scans | [link](https://openneuro.org/datasets/ds000117/) | [@RikHenson](https://github.com/RikHenson) |
| [ds000246](https://github.com/bids-standard/bids-examples/tree/master/ds000246) | Auditory dataset used for Brainstorm’s general online tutorial | anat, meg | T1w, channels, coordsystem, headshape, meg, photo, scans | [link](https://openneuro.org/datasets/ds000246/versions/00001) | [@guiomar](https://github.com/guiomar) |
| [ds000247](https://github.com/bids-standard/bids-examples/tree/master/ds000247) | Five minutes, eyes-open, resting-state MEG data from 5 subjects. This is a sample from The Open MEG Archive (OMEGA). | anat, meg | T1w, channels, coordsystem, headshape, meg, scans | [link](https://openneuro.org/datasets/ds000247/versions/00001) | [@guiomar](https://github.com/guiomar) |
| [ds000248](https://github.com/bids-standard/bids-examples/tree/master/ds000248) | MNE sample data: Data with visual and auditory stimuli | anat, meg | FLASH, T1w, channels, coordsystem, events, meg, scans | [link](https://openneuro.org/datasets/ds000248/versions/00001) | [@agramfort](https://github.com/agramfort) |
### Microscopy
| name | description | datatypes | suffixes | link to full data | maintained by |
|:------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------------------------------|:-----------------------------|:---------------------------------------------------------------------------------------------------------------|:-------------------------------------------------------------|:---------------------------------------------|
| [eeg_ds003645s_hed_demo](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_demo) | Shows usage of Hierarchical Event Descriptor (HED) in .tsv files | anat, beh, eeg, micr, motion | KSSSleep, SPIM, beh, channels, coordsystem, defacemask, eeg, electrodes, events, motion, photo, samples, scans | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |
| [micr_SEM](https://github.com/bids-standard/bids-examples/tree/master/micr_SEM) | Example SEM dataset in PNG format with 1 sample imaged over 2 sessions | micr | SEM, photo, samples, sessions | [link](https://doi.org/10.5281/zenodo.5498378) | [@jcohenadad](https://github.com/jcohenadad) |
| [micr_SEMzarr](https://github.com/bids-standard/bids-examples/tree/master/micr_SEMzarr) | Example SEM dataset in PNG and OME-ZARR format with 1 sample imaged over 2 sessions | micr | SEM, SPIM, samples, sessions | n/a | [@TheChymera](https://github.com/TheChymera) |
| [micr_SPIM](https://github.com/bids-standard/bids-examples/tree/master/micr_SPIM) | Example SPIM dataset in OME-TIFF format with 2 samples from the same subject with 4 chunks each | micr | SPIM, photo, samples | [link](https://doi.org/10.5281/zenodo.5517223) | [@jcohenadad](https://github.com/jcohenadad) |
| [micr_XPCTzarr](https://github.com/bids-standard/bids-examples/tree/master/micr_XPCTzarr) | Example XPCT dataset in OME-ZARR format with 1 sample imaged | micr | XPCT, photo, samples, sessions | [link](https://human-organ-atlas.esrf.eu/datasets/572252538) | [@chourroutm](https://github.com/chourroutm) |
### Motion
| name | description | datatypes | suffixes | link to full data | maintained by |
|:--------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------|:-----------------------------|:---------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------|:-------------------------------------------------|
| [eeg_ds003645s_hed_demo](https://github.com/bids-standard/bids-examples/tree/master/eeg_ds003645s_hed_demo) | Shows usage of Hierarchical Event Descriptor (HED) in .tsv files | anat, beh, eeg, micr, motion | KSSSleep, SPIM, beh, channels, coordsystem, defacemask, eeg, electrodes, events, motion, photo, samples, scans | [link](https://openneuro.org/datasets/ds003645) | [@VisLab](https://github.com/VisLab) |
| [motion_dualtask](https://github.com/bids-standard/bids-examples/tree/master/motion_dualtask) | older and younger participants walking while performing discrimination task | eeg, motion | channels, eeg, events, motion, scans | n/a | [@sjeung](https://github.com/sjeung) |
| [motion_spotrotation](https://github.com/bids-standard/bids-examples/tree/master/motion_spotrotation) | participants rotated heading using full-body motion or joystick | eeg, motion | channels, coordsystem, eeg, electrodes, events, motion, scans | [link](https://openneuro.org/datasets/ds004460) | [@sjeung](https://github.com/sjeung) |
| [motion_systemvalidation](https://github.com/bids-standard/bids-examples/tree/master/motion_systemvalidation) | Example dataset of two different motion captured system recorded almost simultaneously, but no brain data | motion | channels, motion, scans | [link](https://doi.org/10.6084/m9.figshare.20238006.v2) | [@JuliusWelzel](https://github.com/JuliusWelzel) |
### MRI
| name | description | datatypes | suffixes | link to full data | maintained by |
|:------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------|:--------------------------------|:---------------------------------------------------------------------------------------------------------------|:---------------------------------------------------------------|:-------------------------------------------|
| [7t_trt](https://github.com/bids-standard/bids-examples/tree/master/7t_trt) | n/a | anat, fmap, func | T1map, T1w, bold, magnitude1, magnitude2, phasediff, physio, scans, sessions | [link](https://bit.ly/2H0Z6Qt) | n/a |
| [ds000117](https://github.com/bids-standard/bids-examples/tree/master/ds000117) | A multi-subject, multi-modal human neuroimaging dataset of 19 subjects on a MEG visual task | anat, beh, dwi, fmap, func, meg | FLASH, T1w, bold, channels, coordsystem, dwi, events, headshape, magnitude1, magnitude2, meg, phasediff, scans | [link](https://openneuro.org/datasets/ds000117/) | [@RikHenson](https://github.com/RikHenson) |
| [ds001](https://github.com/bids-standard/bids-examples/tree/master/ds001) | single task, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000001/versions/00006) | n/a |
| [ds002](https://github.com/bids-standard/bids-examples/tree/master/ds002) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000002/versions/00002) | n/a |
| [ds003](https://github.com/bids-standard/bids-examples/tree/master/ds003) | single task, single run | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000003/versions/00001) | n/a |
| [ds005](https://github.com/bids-standard/bids-examples/tree/master/ds005) | single task, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000005/versions/00001) | n/a |
| [ds006](https://github.com/bids-standard/bids-examples/tree/master/ds006) | single task, multiple sessions, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000006/versions/00001) | n/a |
| [ds007](https://github.com/bids-standard/bids-examples/tree/master/ds007) | single task, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000007/versions/00001) | n/a |
| [ds008](https://github.com/bids-standard/bids-examples/tree/master/ds008) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000008/versions/00001) | n/a |
| [ds009](https://github.com/bids-standard/bids-examples/tree/master/ds009) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2, scans | [link](https://openneuro.org/datasets/ds000009/versions/00002) | n/a |
| [ds011](https://github.com/bids-standard/bids-examples/tree/master/ds011) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000011/versions/00001) | n/a |
| [ds051](https://github.com/bids-standard/bids-examples/tree/master/ds051) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000051/versions/00001) | n/a |
| [ds052](https://github.com/bids-standard/bids-examples/tree/master/ds052) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000052/versions/00001) | n/a |
| [ds101](https://github.com/bids-standard/bids-examples/tree/master/ds101) | single task, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000101/versions/00004) | n/a |
| [ds102](https://github.com/bids-standard/bids-examples/tree/master/ds102) | single task, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000102/versions/00001) | n/a |
| [ds105](https://github.com/bids-standard/bids-examples/tree/master/ds105) | single task, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000105/versions/00001) | n/a |
| [ds107](https://github.com/bids-standard/bids-examples/tree/master/ds107) | single task, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000107/versions/00001) | n/a |
| [ds108](https://github.com/bids-standard/bids-examples/tree/master/ds108) | single task, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000108/versions/00002) | n/a |
| [ds109](https://github.com/bids-standard/bids-examples/tree/master/ds109) | multiple tasks, multiple runs | anat, func | T1w, bold, events | [link](https://openneuro.org/datasets/ds000109/versions/00001) | n/a |
| [ds110](https://github.com/bids-standard/bids-examples/tree/master/ds110) | single task, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000110/versions/00001) | n/a |
| [ds113b](https://github.com/bids-standard/bids-examples/tree/master/ds113b) | forrest gump watching, multiple sessions, multiple runs | func | bold, events | [link](https://openneuro.org/datasets/ds000113/versions/1.3.0) | n/a |
| [ds114](https://github.com/bids-standard/bids-examples/tree/master/ds114) | multiple tasks, multiple runs | anat, dwi, func | T1w, bold, dwi, events | [link](https://openneuro.org/datasets/ds000114/versions/1.0.1) | n/a |
| [ds116](https://github.com/bids-standard/bids-examples/tree/master/ds116) | multiple tasks, multiple runs | anat, func | T1w, bold, events, inplaneT2 | [link](https://openneuro.org/datasets/ds000116/versions/00003) | n/a |
| [ds210](https://github.com/bids-standard/bids-examples/tree/master/ds210) | multiple tasks, multiple runs | func | bold, physio | [link](https://openneuro.org/datasets/ds000210/versions/00002) | n/a |
| [eeg_rest_fmri](https://github.com/bids-standard/bids-examples/tree/master/eeg_rest_fmri) | Resting state with simultaneous fMRI. BrainVision data format (.eeg, .vhdr, .vmrk) | anat, dwi, eeg, func | T1w, bold, dwi, eeg | n/a | [@cpernet](https://github.com/cpernet) |
| [genetics_ukbb](https://github.com/bids-standard/bids-examples/tree/master/genetics_ukbb) | multiple tasks, T1w, DTI, BOLD, genetic info | anat, dwi, func | FLAIR, T1w, bold, dwi, events, info | n/a | [@cpernet](https://github.com/cpernet) |
| [ieeg_visual_multimodal](https://github.com/bids-standard/bids-examples/tree/master/ieeg_visual_multimodal) | n/a | anat, fmap, func, ieeg | T1w, bold, channels, coordsystem, electrodes, epi, events, ieeg, sbref | n/a | [@irisgroen](https://github.com/irisgroen) |
| [synthetic](https://github.com/bids-standard/bids-examples/tree/master/synthetic) | A synthetic dataset | anat, beh, func | T1w, beh, bold, events, physio, scans, sessions, stim | n/a | [@effigies](https://github.com/effigies) |
### MRS
| name | description | datatypes | suffixes | link to full data | maintained by |
|:--------------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------|:------------|:-------------------------|:-------------------------------------------------|:---------------------------------------------------|
| [mrs_2dmrsi](https://github.com/bids-standard/bids-examples/tree/master/mrs_2dmrsi) | 2D sLASER MRSI data from 8 subjects | anat, mrs | T1w, mrsi | [link](https://zenodo.org/records/7701228) | [@markmikkelsen](https://github.com/markmikkelsen) |
| [mrs_biggaba](https://github.com/bids-standard/bids-examples/tree/master/mrs_biggaba) | MEGA-PRESS and PRESS MRS data from 12 subjects from one site from the Big GABA project | anat, mrs | T1w, mrsref, svs | [link](https://www.nitrc.org/projects/biggaba) | [@markmikkelsen](https://github.com/markmikkelsen) |
| [mrs_fmrs](https://github.com/bids-standard/bids-examples/tree/master/mrs_fmrs) | Functional MRS data involving a pain stimulus task from 15 subjects | anat, mrs | T1w, events, mrsref, svs | [link](https://www.nitrc.org/projects/fmrs_2020) | [@markmikkelsen](https://github.com/markmikkelsen) |
### NIRS
| name | description | datatypes | suffixes | link to full data | maintained by |
|:----------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------|:------------|:---------------------------------------------------------------------|:-----------------------------------------------|:---------------------------------------------------------|
| [fnirs_automaticity](https://github.com/bids-standard/bids-examples/tree/master/fnirs_automaticity) | 24 subjects performing (non-)automatic finger tapping and foot stepping | nirs | channels, coordsystem, events, nirs, optodes, practicelogbook, scans | [link](https://doi.org/10.34973/vesb-mh30) | [@robertoostenveld](https://github.com/robertoostenveld) |
| [fnirs_tapping](https://github.com/bids-standard/bids-examples/tree/master/fnirs_tapping) | Example fNIRS measurement with three conditions from five subjects | nirs | channels, coordsystem, events, nirs, optodes, scans | [link](https://doi.org/10.5281/zenodo.5529797) | [@rob-luke](https://github.com/rob-luke) |
### PET
| name | description | datatypes | suffixes | link to full data | maintained by |
|:----------------------------------------------------------------------------|:----------------|:------------|:-----------------|:-------------------------------------------------|:---------------------------------------------|
| [pet001](https://github.com/bids-standard/bids-examples/tree/master/pet001) | T1w, PET, blood | anat, pet | T1w, blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
| [pet002](https://github.com/bids-standard/bids-examples/tree/master/pet002) | T1w, PET | anat, pet | T1w, pet | [link](https://openneuro.org/datasets/ds001420/) | [@mnoergaard](https://github.com/mnoergaard) |
| [pet003](https://github.com/bids-standard/bids-examples/tree/master/pet003) | T1w, PET, blood | anat, pet | T1w, blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
| [pet004](https://github.com/bids-standard/bids-examples/tree/master/pet004) | PET, blood | pet | blood, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
| [pet005](https://github.com/bids-standard/bids-examples/tree/master/pet005) | T1w, PET | anat, pet | T1w, events, pet | n/a | [@mnoergaard](https://github.com/mnoergaard) |
### qMRI
| name | description | datatypes | suffixes | link to full data | maintained by |
|:--------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------|:------------|:-------------------------------------------------------|:------------------------------|:-------------------------------------------------------------|
| [qmri_irt1](https://github.com/bids-standard/bids-examples/tree/master/qmri_irt1) | Inversion Recovery T1 mapping | anat | IRT1 | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |
| [qmri_megre](https://github.com/bids-standard/bids-examples/tree/master/qmri_megre) | Multi-Echo Gradient-Echo for T2star mapping. | anat | MEGRE | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |
| [qmri_mese](https://github.com/bids-standard/bids-examples/tree/master/qmri_mese) | Multi-Echo Spin-Echo for T2 or Myelin Water Fraction (MWF) mapping. | anat | MESE | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |
| [qmri_mp2rage](https://github.com/bids-standard/bids-examples/tree/master/qmri_mp2rage) | MP2RAGE for T1 mapping | anat | MP2RAGE, T1map, UNIT1, defacemask | [link](https://osf.io/k4bs5/) | [@Gilles86](https://github.com/Gilles86) |
| [qmri_mp2rageme](https://github.com/bids-standard/bids-examples/tree/master/qmri_mp2rageme) | Multi-echo MP2RAGE | anat, fmap | MP2RAGE, TB1map | [link](https://osf.io/k4bs5/) | [@Gilles86](https://github.com/Gilles86) |
| [qmri_mpm](https://github.com/bids-standard/bids-examples/tree/master/qmri_mpm) | Multi-parametric mapping for R1, R2star, MTsat and PD mapping | anat, fmap | MPM, RB1COR, TB1EPI, magnitude1, magnitude2, phasediff | [link](https://osf.io/k4bs5/) | [@ChristophePhillips](https://github.com/ChristophePhillips) |
| [qmri_mtsat](https://github.com/bids-standard/bids-examples/tree/master/qmri_mtsat) | Example dataset for T1 and MTsat mapping. Includes a double-angle B1+ mapping example. | anat, fmap | MTS, TB1DAM | [link](https://osf.io/k4bs5/) | [@agahkarakuzu](https://github.com/agahkarakuzu) |
| [qmri_qsm](https://github.com/bids-standard/bids-examples/tree/master/qmri_qsm) | Chimap using fast QSM | anat | T1w | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |
| [qmri_sa2rage](https://github.com/bids-standard/bids-examples/tree/master/qmri_sa2rage) | Fast B1+ mapping using SA2RAGE | fmap | TB1SRGE | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |
| [qmri_tb1tfl](https://github.com/bids-standard/bids-examples/tree/master/qmri_tb1tfl) | B1+ mapping with TurboFLASH readout. | fmap | TB1TFL | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |
| [qmri_vfa](https://github.com/bids-standard/bids-examples/tree/master/qmri_vfa) | Variable Flip Angle T1 mapping. Includes an Actual Flip Angle (AFI) B1+ mapping example. | anat, fmap | TB1AFI, VFA | [link](https://osf.io/k4bs5/) | [@agahkarakuzu](https://github.com/agahkarakuzu) |