https://github.com/4ment/aiv-rate-heterogeneity

Avian influenza virus data sets
https://github.com/4ment/aiv-rate-heterogeneity

data influenza

Last synced: about 5 hours ago
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Avian influenza virus data sets

• Host: GitHub
• URL: https://github.com/4ment/aiv-rate-heterogeneity
• Owner: 4ment
• Created: 2015-06-17T00:46:19.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2016-02-22T02:25:35.000Z (over 8 years ago)
• Last Synced: 2023-02-28T17:22:45.896Z (over 1 year ago)
• Topics: data, influenza
• Homepage:
• Size: 815 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Avian influenza virus exhibits distinct evolutionary dynamics in wild birds and poultry

This repository contains the data sets supporting the results of the following article:

Fourment M. & Holmes E.C. Avian influenza virus exhibits distinct evolutionary dynamics in wild birds and poultry. *BMC Evolutionary Biology*, 2015, 15:120; doi: 10.1186/s12862-015-0410-5.

Each FASTA file contains a nucleotide alignment:

* H4-PA.fa, H4-PB1.fa, and H4-PB2.fa contain H4 internal genes isolated from wild birds only.

* H6-PA.fa, H6-PB1.fa, and H6-PB2.fa contain H6 internal genes isolated from wild birds only.

* H5-poultry-PA.fa, H5-poultry-PB1.fa, and H5-poultry-PB2.fa contain H5 internal genes isolated from poultry (i.e. turkey and chicken) only.

* H6-poultry-PA.fa, H6-poultry-PB1.fa, and H6-poultry-PB2.fa contain H6 internal genes isolated from poultry (i.e. turkey and chicken) only.