https://github.com/ArtesiaWater/hydropandas
Module for loading observation data into custom DataFrames
https://github.com/ArtesiaWater/hydropandas
data groundwater hydrology observations pandas timeseries
Last synced: 6 months ago
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Module for loading observation data into custom DataFrames
- Host: GitHub
- URL: https://github.com/ArtesiaWater/hydropandas
- Owner: ArtesiaWater
- License: mit
- Created: 2019-06-28T09:58:59.000Z (almost 6 years ago)
- Default Branch: master
- Last Pushed: 2024-10-16T19:35:20.000Z (7 months ago)
- Last Synced: 2024-10-29T22:32:04.738Z (6 months ago)
- Topics: data, groundwater, hydrology, observations, pandas, timeseries
- Language: Python
- Homepage: https://hydropandas.readthedocs.io
- Size: 45.9 MB
- Stars: 56
- Watchers: 7
- Forks: 11
- Open Issues: 22
-
Metadata Files:
- Readme: readme.md
- License: LICENSE
Awesome Lists containing this project
- open-sustainable-technology - Hydropandas - A Python package for reading, analyzing, and writing hydrological time series from a pandas DataFrame, with all of its wonderful features, and extended with custom methods and attributes related to hydrological time series. (Hydrosphere / Ocean and Hydrology Data Access)
README
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# HydroPandas
Hydropandas is a Python package for reading, analyzing and writing
(hydrological) timeseries data.
## Introduction
The HydroPandas package allows users to store a timeseries and metadata in a
single object. This object inherits from a pandas DataFrame, with all its
wonderful features, and is extended with custom methods and attributes related
to hydrological timeseries.
The HydroPandas package also provides convenient read functions for Dutch hydrological data from:
- [BRO](https://www.broloket.nl)
- [DINO](https://www.dinoloket.nl)
- FEWS PI-XML
- [KNMI](https://www.knmi.nl/kennis-en-datacentrum/achtergrond/data-ophalen-vanuit-een-script)
- [Lizard](https://vitens.lizard.net/)
- MODFLOW groundwater models
- IMOD groundwater models
- [Pastastore](https://github.com/pastas/pastastore)
- [Waterinfo](https://waterinfo.rws.nl/)
- WISKI csv files
## Install
Install the module with pip:
`pip install hydropandas`
HydroPandas requires `pandas`, `scipy`, `matplotlib`, `tqdm`, `requests` and `colorama`.
For some functionality additional packages are required:
- `geopandas`: for dealing with shapefiles
- `pastastore`: for reading or storing data from PastaStore
- `bokeh`, `branca`, `folium`: for interactive maps
- `flopy`: for reading data from MODFLOW models
- `xarray`: for loading data from REGIS
For installing in development mode, clone the repository and install by
typing `pip install -e .` from the module root directory.
For installing all the optional packages use `pip install -e .[full]`.
## Get in touch
- Questions on HydroPandas ("How can I?") can be asked and answered on [Github Discussions](https://github.com/ArtesiaWater/hydropandas/discussions).
- Bugs, feature requests and other improvements can be posted as [Github Issues](https://github.com/ArtesiaWater/hydropandas/issues).
- Find out how to contribute to HydroPandas at our [Contribution page](https://hydropandas.readthedocs.io/en/stable/contribute.html).
## Examples
Importing a groundwater time series from the BRO using the BRO-id and the tube number:
```python
import hydropandas as hpd
gw_bro = hpd.GroundwaterObs.from_bro("GMW000000041261", 1)
```
Or import all groundwater time series from the BRO within a certain extent:
```python
oc = hpd.read_bro(extent=(117850, 118180, 439550, 439900))
```
## The Obs class
The Obs class holds the measurements and metadata for one timeseries. There are
currently 5 specific Obs classes for different types of measurements:
- GroundwaterObs: for groundwater measurements
- WaterQualityObs: for groundwater quality measurements
- WaterlvlObs: for surface water level measurements
- ModelObs: for "observations" from a MODFLOW model
- MeteoObs: for meteorological observations
- PrecipitationObs: for precipitation observations, subclass of MeteoObs
- EvaporationObs: for evaporation observations, subclass of MeteoObs
Each of these Obs classes is essentially a pandas DataFrame with additional
methods and attributes related to the type of measurement that it holds.
Each Obs object also contain specific methods to read data from specific sources.
## The ObsCollection class
The ObsCollection class, as the name implies, represents a collection of Obs
classes, e.g. 10 timeseries of the groundwater level in a certain area. The
ObsCollection is also a pandas DataFrame in which each timeseries is stored
in a different row. Each row contains metadata (e.g. latitude and longitude
of the observation point) and the Obs object (DataFrame) that holds the
measurements. It is recommended to let an ObsCollection contain only one Obs
type, e.g. to create an ObsCollection for 10 GroundwaterObs, and a separate
ObsCollection for 5 PrecipitationObs.
Like the Obs class, the ObsCollection class contains a bunch of methods for
reading data from different sources. See the next section for supported data
sources.
## Authors
- Onno Ebbens, Artesia
- Ruben Caljé, Artesia
- Davíd Brakenhoff, Artesia
- Martin Vonk, Artesia