https://github.com/PlanktonTeam/planktonr

r Package for the analysis and visualisation of plankton data
https://github.com/PlanktonTeam/planktonr

Last synced: 3 days ago
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r Package for the analysis and visualisation of plankton data

• Host: GitHub
• URL: https://github.com/PlanktonTeam/planktonr
• Owner: PlanktonTeam
• License: other
• Created: 2021-07-12T04:56:49.000Z (almost 4 years ago)
• Default Branch: main
• Last Pushed: 2025-04-10T08:11:16.000Z (about 1 month ago)
• Last Synced: 2025-05-02T15:36:44.922Z (8 days ago)
• Language: R
• Homepage: https://planktonteam.github.io/planktonr/
• Size: 172 MB
• Stars: 4
• Watchers: 1
• Forks: 1
• Open Issues: 20
• Metadata Files:
  • Readme: README.Rmd
  • License: LICENSE

Awesome Lists containing this project

• open-sustainable-technology - planktonr - R package that facilitates the download, analysis and visualisation of phytoplankton and zooplankton data. (Biosphere / Marine Life and Fishery)

README

        
---

output: github_document

---

```{r, include = FALSE}

knitr::opts_chunk$set(

  collapse = TRUE,

  comment = "#>",

  fig.path = "man/figures/README-",

  out.width = "100%"

)

```

# planktonr 

[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)

[![Windows](https://github.com/PlanktonTeam/planktonr/actions/workflows/Windows.yaml/badge.svg)](https://github.com/PlanktonTeam/planktonr/actions/workflows/Windows.yaml)

[![Ubuntu](https://github.com/PlanktonTeam/planktonr/actions/workflows/Ubuntu.yaml/badge.svg)](https://github.com/PlanktonTeam/planktonr/actions/workflows/Ubuntu.yaml)

[![MacOS](https://github.com/PlanktonTeam/planktonr/actions/workflows/MacOS.yaml/badge.svg)](https://github.com/PlanktonTeam/planktonr/actions/workflows/MacOS.yaml)

[![Codecov test coverage](https://codecov.io/gh/PlanktonTeam/planktonr/branch/master/graph/badge.svg)](https://app.codecov.io/gh/PlanktonTeam/planktonr?branch=master)

[![issues - planktonr](https://img.shields.io/github/issues/PlanktonTeam/planktonr)](https://github.com/PlanktonTeam/planktonr/issues)

`planktonr` is an r package that facilitates the download, analysis and visualisation of phytoplankton and zooplankton data. Our initial focus will be on plankton data stored on the Australian Ocean Data Network ([AODN](https://portal.aodn.org.au)) and collected by the Integrated Marine Observing System ([IMOS](www.imos.org.au)), but we hope to expand to other plankton data sets in the future. 

## Installation

Be aware that this package is in the very early stages of development. Functions and documentation are not complete so installing at the moment is at your own risk. If you are still interested, you can install the development version from [GitHub](https://github.com/) with:

``` r

# install.packages("devtools")

devtools::install_github("PlanktonTeam/planktonr")

```

Thanks to the team at the Integration and Application Network (ian.umces.edu/media-library) for the plankton symbols used in the planktonr hex sticker.