https://github.com/TheoMichelot/moveHMM

R package - Animal movement modelling using hidden Markov models
https://github.com/TheoMichelot/moveHMM

Last synced: 3 months ago
JSON representation

R package - Animal movement modelling using hidden Markov models

• Host: GitHub
• URL: https://github.com/TheoMichelot/moveHMM
• Owner: TheoMichelot
• Created: 2015-07-14T08:25:37.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2024-03-16T14:53:09.000Z (8 months ago)
• Last Synced: 2024-08-14T00:12:56.220Z (3 months ago)
• Language: R
• Homepage: https://cran.r-project.org/package=moveHMM
• Size: 5.38 MB
• Stars: 35
• Watchers: 9
• Forks: 11
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

• open-sustainable-technology - moveHMM - R package which implements hidden Markov models and associated tools (state decoding, model selection, model checking, etc.) tailored to animal movement modelling. (Biosphere / Ecological and Environmental Modeling)

README

        

# moveHMM [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/moveHMM)](https://cran.r-project.org/package=moveHMM) [![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](http://www.gnu.org/licenses/gpl-3.0) [![Downloads](http://cranlogs.r-pkg.org/badges/moveHMM)](https://cran.r-project.org/package=moveHMM)

An R package for analysing animal movement with hidden Markov models.

Get started with the vignettes: 

- [Guide to using moveHMM](https://CRAN.R-project.org/package=moveHMM/vignettes/moveHMM-guide.pdf)

- [moveHMM workflow: wild haggis analysis](https://cran.r-project.org/package=moveHMM/vignettes/moveHMM-example.pdf)

- [Choosing starting values in moveHMM](https://cran.r-project.org/package=moveHMM/vignettes/moveHMM-starting-values.pdf)

## Installation instructions

### Stable release

The package is available on [CRAN](https://CRAN.R-project.org/package=moveHMM). To install it from CRAN, you can use the following command:

``` R

install.packages("moveHMM")

```

### Install from Github

To install the latest (**unstable**) version of the package from Github:

``` R

devtools::install_github("TheoMichelot/moveHMM", build_vignettes = TRUE)

```

## References

Michelot, T., Langrock, R., Patterson, T.A. (2016). [moveHMM: An R package for analysing animal movement data using hidden Markov models](https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12578). *Methods in Ecology and Evolution*. 7(11), 1308-1315.

Langrock, R., King, R., Matthiopoulos, J., Thomas, L., Fortin, D., & Morales, J. M. (2012). [Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions](https://esajournals.onlinelibrary.wiley.com/doi/full/10.1890/11-2241.1). *Ecology*, 93(11), 2336-2342.

Patterson, T. A., Basson, M., Bravington, M. V., & Gunn, J. S. (2009). [Classifying movement behaviour in relation to environmental conditions using hidden Markov models](https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/j.1365-2656.2009.01583.x). *Journal of Animal Ecology*, 78(6), 1113-1123.