https://github.com/abrg-models/ermentrout2009
An implementation of reaction-diffusion whisker barrel patterns after Ermentrout et al 2009 (PLOS Comp Biol)
https://github.com/abrg-models/ermentrout2009
Last synced: 8 months ago
JSON representation
An implementation of reaction-diffusion whisker barrel patterns after Ermentrout et al 2009 (PLOS Comp Biol)
- Host: GitHub
- URL: https://github.com/abrg-models/ermentrout2009
- Owner: ABRG-Models
- Created: 2018-06-19T23:21:42.000Z (about 8 years ago)
- Default Branch: master
- Last Pushed: 2018-07-22T14:34:04.000Z (almost 8 years ago)
- Last Synced: 2024-12-27T08:27:07.403Z (over 1 year ago)
- Language: C++
- Size: 12.7 KB
- Stars: 0
- Watchers: 5
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# Ermentrout2009
An implementation of reaction-diffusion whisker barrel patterns after:
Subbarrel Patterns in Somatosensory Cortical Barrels Can Emerge from
Local Dynamic Instabilities, Ermentrout et al 2009 (PLOS Comp Biol).
## Build instructions
First, git clone, compile and install libmorphologica:
https://github.com/ABRG-Models/morphologica
This model is launched by a python script called sim.py. sim.py will
launch (using code in processes.py) 1 or more instances of a compiled
C++ program called processes. Before this will work, you need to
compile processes:
```sh
cd processes/sim
mkdir build
cd build
cmake ..
make
cd ../../../
```
Now you can run the model:
```sh
python sim.py
```
This should launch two separate simulations showing the solution to a
reaction-diffusion system as given in the paper (does this correspond
to any particular figure in the paper?).