https://github.com/aezarebski/epi-sim
A library for simulating epidemics, with a focus on phylodynamics and observation models.
https://github.com/aezarebski/epi-sim
birth-death-sampling simulation
Last synced: 8 months ago
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A library for simulating epidemics, with a focus on phylodynamics and observation models.
- Host: GitHub
- URL: https://github.com/aezarebski/epi-sim
- Owner: aezarebski
- License: mit
- Created: 2020-04-24T06:26:27.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2021-08-05T12:21:28.000Z (almost 5 years ago)
- Last Synced: 2025-08-30T21:32:08.427Z (10 months ago)
- Topics: birth-death-sampling, simulation
- Language: Haskell
- Homepage:
- Size: 565 KB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 7
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Metadata Files:
- Readme: README.md
- Changelog: ChangeLog.md
- License: LICENSE
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README
# epi-sim
A library for simulating stochastic epidemic models, with a focus on
phylodynamics and observation models.
## Epidemic events
A realisation of the model is represented by a list of `EpidemicEvent`s which
describe the events that occurred.
## Available models
Although this package supports the definition of new models there are some that
are implemented already in the `Epidemic.Model` module. Implemented models
include:
1. Birth-Death-Sampling-Catastrophe-Occurrence-Disaster (see `BDSCOD.hs`)
2. Inhomogeneous Birth-Death-Sampling (see `InhomogeneousBDS.hs`)
3. Inhomogeneous Birth-Death-Sampling-Catastrophe-Occurrence-Disaster (see
`InhomogeneousBDSCOD.hs`)
4. Logistic Birth-Death-Sampling-Disaster (see `LogisticBDSD.hs`)