https://github.com/alleninstitute/spatial_compare
package for comparing spatial transcriptomics datasets
https://github.com/alleninstitute/spatial_compare
Last synced: 11 months ago
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package for comparing spatial transcriptomics datasets
- Host: GitHub
- URL: https://github.com/alleninstitute/spatial_compare
- Owner: AllenInstitute
- License: other
- Created: 2024-06-11T16:40:30.000Z (about 2 years ago)
- Default Branch: main
- Last Pushed: 2025-01-24T19:45:26.000Z (over 1 year ago)
- Last Synced: 2025-04-11T20:08:48.560Z (about 1 year ago)
- Language: Jupyter Notebook
- Size: 105 MB
- Stars: 6
- Watchers: 4
- Forks: 9
- Open Issues: 16
-
Metadata Files:
- Readme: README.md
- License: LICENSE.txt
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README
`Spatial_Compare`
_work in progress!_
_this package is in development and currently unsupported_
Comparison of spatial experiments based on matched labels.
_Not fancy, helpful_ ™.
to install:
To install `Spatial_Compare`:
1. Clone the repo and cd into the project directory
```
git clone https://github.com/AllenInstitute/spatial_compare.git
cd spatial_compare
```
2. Install the required dependencies and install the project:
```
pip install -r requirements.txt
pip install .
```
Alternatively you can install directly from github:
```
pip install git+https://github.com/AllenInstitute/spatial_compare.git
```
The example notebook walks through some comparisons across Xenium experiments on marmoset brain.