https://github.com/amlalejini/directed-digital-evolution

Computational model of laboratory directed evolution + experiments.
https://github.com/amlalejini/directed-digital-evolution

artificial-selection digital-evolution directed-evolution evolutionary-computation parent-selection-algorithms

Last synced: 3 months ago
JSON representation

Computational model of laboratory directed evolution + experiments.

• Host: GitHub
• URL: https://github.com/amlalejini/directed-digital-evolution
• Owner: amlalejini
• Created: 2021-08-23T20:52:26.000Z (almost 4 years ago)
• Default Branch: main
• Last Pushed: 2022-06-29T17:59:40.000Z (almost 3 years ago)
• Last Synced: 2024-04-21T02:19:13.074Z (about 1 year ago)
• Topics: artificial-selection, digital-evolution, directed-evolution, evolutionary-computation, parent-selection-algorithms
• Language: Python
• Homepage:
• Size: 71 MB
• Stars: 3
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md
  • Citation: CITATION.cff

Awesome Lists containing this project

README

        
# Directed digital evolution

[![supplemental](https://img.shields.io/badge/go%20to-supplemental%20material-ff69b4)](https://lalejini.com/directed-digital-evolution/)

[![DOI](https://zenodo.org/badge/399244755.svg)](https://zenodo.org/badge/latestdoi/399244755)

[![OSF](https://img.shields.io/badge/data%20%40%20OSF-10.17605%2FOSF.IO%2FZN63X-blue)](https://osf.io/zn63x/)

[![DockerHub link](https://img.shields.io/badge/DockerHub-Hosted-blue)](https://hub.docker.com/r/amlalejini/directed-digital-evolution/)

[![GitHub stars](https://img.shields.io/github/stars/amlalejini/directed-digital-evolution.svg?logo=github&label=Stars&logoColor=white)](https://github.com/amlalejini/directed-digital-evolution)

Click the supplemental material badge (in pink) at the top of this readme to navigate to the supplemental material ebook.

Repository guide:

- [bib/](https://github.com/amlalejini/directed-digital-evolution/tree/main/bib) contains BibTex files with references used in the supplemental material.

- [docs/](https://github.com/amlalejini/directed-digital-evolution/tree/main/docs) contains documentation

- [experiments/](https://github.com/amlalejini/directed-digital-evolution/tree/main/experiments) contains the configuration files, HPC submission scripts, and analyses for all preliminary and final (published) experiments

- [include/](https://github.com/amlalejini/directed-digital-evolution/tree/main/include) contains the C++ header files that implement the model of directed evolution

- [tests/](https://github.com/amlalejini/directed-digital-evolution/tree/main/tests) contains tests for directed digital evolution library functions

## Credits

This package was created with [Cookiecutter](https://github.com/cookiecutter/cookiecutter) and the [devosoft/cookiecutter-empirical-project](https://github.com/devosoft/cookiecutter-empirical-project) project template.

This package uses [Empirical](https://github.com/devosoft/Empirical#readme), a library of tools for scientific software development, with emphasis on also being able to build web interfaces using Emscripten.