https://github.com/aphp/cohort360-frontend

A web application to find patients, build cohorts and visualize health records
https://github.com/aphp/cohort360-frontend

clinical-data cohort-analysis cohort-data cohort-selection cohort-studies cohorts data-visualization fhir fhir-api find-patients medical medtech omop omop-cdm query visualize-data

Last synced: 5 days ago
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A web application to find patients, build cohorts and visualize health records

• Host: GitHub
• URL: https://github.com/aphp/cohort360-frontend
• Owner: aphp
• License: apache-2.0
• Created: 2020-11-04T09:46:02.000Z (about 4 years ago)
• Default Branch: main
• Last Pushed: 2024-12-17T10:48:13.000Z (8 days ago)
• Last Synced: 2024-12-17T11:36:16.853Z (8 days ago)
• Topics: clinical-data, cohort-analysis, cohort-data, cohort-selection, cohort-studies, cohorts, data-visualization, fhir, fhir-api, find-patients, medical, medtech, omop, omop-cdm, query, visualize-data
• Language: TypeScript
• Homepage: https://docs.cohort360.org
• Size: 110 MB
• Stars: 45
• Watchers: 8
• Forks: 10
• Open Issues: 9
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE

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A web application to find patients, build cohorts and visualize data.



# Cohort360

[![Actions Status](https://github.com/aphp/Cohort360-FrontEnd/workflows/cohort360-main-pipeline/badge.svg)](https://github.com/aphp/Cohort360-FrontEnd/actions)

[![Quality Gate](https://sonarcloud.io/api/project_badges/measure?project=aphp_Cohort360&metric=alert_status)](https://sonarcloud.io/dashboard?id=aphp_Cohort360)

## Architecture

- [ ] Add Architecture schema 

Cohort360 consists of a React front-end and a Django back-end (REST API).

This repository hosts the front-end, while the back-end will be available soon.

Both the front-end and the back-end depend on a third, possibly custom, party: an endpoint to query medical data and to create cohorts.

This third endpoint can be a FHIR API for example. This is the case for the first creators of Cohort360.

## Installation

### Requirements:

* A running back-end server

* A running third party endpoint (FHIR API for example)

* An authentication server

* Node.js (16 or higher) installed

### Running the front-end

1. First copy the `.env.example` file to `.env` and edit this file to match your configuration.

2. Run `npm install`

3. Run `npm audit fix`

4. Run `npm run build`

This will generate files in the `build` directory that can be exposed via a web server like Nginx, or a node server.

An example configuration with Nginx can be found [here](.templates/nginx.conf)

## CI

A [gitlab-ci.yml](.templates/.gitlab-ci.yml) is available in the `.templates` folder, alongside

a [nginx configuration](.templates/nginx.conf) example (useful for deployment).

## Deployment

A docker image is available to build via the [Dockerfile](Dockerfile). You only need to update the location of your nginx conf. 

## Start Contributing

A contributing guide will be published soon.

## Partners

* AP-HP Clinical Data Warehouse

* Arkhn : [arkhn.org](https://arkhn.org/)

* Akimed : [www.akimed.io](https://www.akimed.io/)

## Contributors

Coming soon...

## License

Cohort360 is licensed under Apache License 2.