https://github.com/aplbrain/neuroglancer-segment-properties

This application integrates with Neuroglancer via the CAVEclient library to manage neuroimaging data, allowing users to create, view, and manipulate segment properties in its 3D environment.
https://github.com/aplbrain/neuroglancer-segment-properties

Last synced: over 1 year ago
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This application integrates with Neuroglancer via the CAVEclient library to manage neuroimaging data, allowing users to create, view, and manipulate segment properties in its 3D environment.

• Host: GitHub
• URL: https://github.com/aplbrain/neuroglancer-segment-properties
• Owner: aplbrain
• Created: 2024-05-09T15:46:54.000Z (about 2 years ago)
• Default Branch: main
• Last Pushed: 2024-05-10T02:38:46.000Z (about 2 years ago)
• Last Synced: 2025-01-22T00:16:07.279Z (over 1 year ago)
• Language: Python
• Size: 1.74 MB
• Stars: 0
• Watchers: 4
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

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README

          
# Overview: UI for Segment Properties in Neuroglancer

This system is designed to enable users to generate URLs that link to specific segment properties within Neuroglancer, an interactive web-based tool for visualizing 3D image data. 

The involves selecting a datastack using CAVEclient and a corresponding table from a dropdown menu, which then triggers a server-side computation to generate a URL that points directly to the configured view in Neuroglancer.

![Pipeline](https://github.com/aplbrain/neuroglancer-segment-properties/assets/66258538/d256ad0d-3493-4f0d-97c2-acffca669afe)

# Setting Up

**Installation**

Upgrade pip and install required packages:

`python -m pip install --upgrade pip`

`pip install Flask caveclient pandas numpy`

**Running the Application** 

To start the server and run the application, navigate to the project directory and execute:

`python app.py`