Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/applicativesystem/go-alignment-block-getter
alignment block getter for getting blocks of alignment from specific alignments
https://github.com/applicativesystem/go-alignment-block-getter
bioinformatics evolutionary-computation genome-alignment genome-analysis genome-sequencing golang-package phylogenomics phylogenomics-bioinformatics phylogenomics-golang
Last synced: 7 days ago
JSON representation
alignment block getter for getting blocks of alignment from specific alignments
- Host: GitHub
- URL: https://github.com/applicativesystem/go-alignment-block-getter
- Owner: applicativesystem
- License: mit
- Created: 2024-09-21T18:04:30.000Z (3 months ago)
- Default Branch: main
- Last Pushed: 2024-09-29T07:51:43.000Z (3 months ago)
- Last Synced: 2024-11-10T20:18:10.711Z (about 1 month ago)
- Topics: bioinformatics, evolutionary-computation, genome-alignment, genome-analysis, genome-sequencing, golang-package, phylogenomics, phylogenomics-bioinformatics, phylogenomics-golang
- Language: Go
- Homepage:
- Size: 4.88 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# go-alignment-block-getter
- etxracting a particular block of alignment from the genome alignment
- extract a region specific block and write the block alignment.
```
[gauravsablok@ultramarine]~/Desktop/codecreatede/golang-alignment-block-getter% \
go run main.go -h
This estimates the site proportion in your whole genome or gene specific alignment
Usage:
flags [flags]
Flags:
-a, --alignmentfile string a alignment file (default "align")
-e, --endcoordinate int end of the alignment block (default 40)
-h, --help help for flags
-s, --startcoordinate int start of the alignment block (default 1)
[gauravsablok@ultramarine]~/Desktop/codecreatede/golang-alignment-block-getter% \
go run main.go -a ./samplefile/samplealignment.fasta -s 1 -e 10
>ENA|OX291461|OX291461.1 AACTATC--
>ENA|OX291509|OX291509.1 CTC----TC
```
Gaurav Sablok