https://github.com/applicativesystem/go-phylogenomics-tab

estimation of phygenome conservation across the genome alignments
https://github.com/applicativesystem/go-phylogenomics-tab

bioinformatics data-structures evolutionary-algorithms genome genome-analysis genome-phylogenomics phylogenomics phylogenomics-golang

Last synced: 7 days ago
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estimation of phygenome conservation across the genome alignments

• Host: GitHub
• URL: https://github.com/applicativesystem/go-phylogenomics-tab
• Owner: applicativesystem
• License: mit
• Created: 2024-09-18T10:47:06.000Z (3 months ago)
• Default Branch: main
• Last Pushed: 2024-09-29T07:49:17.000Z (3 months ago)
• Last Synced: 2024-11-10T20:18:10.785Z (about 1 month ago)
• Topics: bioinformatics, data-structures, evolutionary-algorithms, genome, genome-analysis, genome-phylogenomics, phylogenomics, phylogenomics-golang
• Language: Go
• Homepage:
• Size: 4.88 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# go-phylogenomics-tab

- estimates the phylogenomics conservation from your alignments.

- estimate large scale implementation with sequence conservation scores

- implementation of the native data structures by tabulating the alignment block as iter.

- conversation score = number of the matches across the entire sequence block/ alignment length

- these all subfunctions are available in the alignmentGO package. 

```

[gauravsablok@fedora]~/Desktop/codecreatede/go-phyloegenomics-tab% \

go run main.go -alignmentfile ./samplefile/samplealignment.fasta

The number of the matches across the alignments blocks are: 15

The number of the mismatches across the alignments blocks are: 71

The sequence conservation score for the matrix alignment is: 1% 

```

Gaurav Sablok