https://github.com/applicativesystem/go-reference-alignment-estimate

estimate the alignment stats based on a selected reference genome or gene sequence from the alignment
https://github.com/applicativesystem/go-reference-alignment-estimate

bioinformatics evolutionary-biology evolutionary-computation genome-alignment-bioinformatics phylogenomics phylogenomics-bioinformatics phylogenomics-golang whole-genome-sequencing

Last synced: 7 days ago
JSON representation

estimate the alignment stats based on a selected reference genome or gene sequence from the alignment

• Host: GitHub
• URL: https://github.com/applicativesystem/go-reference-alignment-estimate
• Owner: applicativesystem
• License: mit
• Created: 2024-09-26T19:18:26.000Z (3 months ago)
• Default Branch: main
• Last Pushed: 2024-09-29T07:46:00.000Z (3 months ago)
• Last Synced: 2024-11-10T20:18:13.692Z (about 1 month ago)
• Topics: bioinformatics, evolutionary-biology, evolutionary-computation, genome-alignment-bioinformatics, phylogenomics, phylogenomics-bioinformatics, phylogenomics-golang, whole-genome-sequencing
• Language: Go
• Homepage:
• Size: 5.86 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
# golang-reference-alignment-estimate 

- This package deals with the genome or the gene alignment and you can define a reference sequence for the same.

-  By defining the reference sequence, you are using that sequence against the other sequence for the calculation of the alignment estimates.

```

[gauravsablok@ultramarine]~/Desktop/codecreatede/golang/golang-reference-alignment-estimate% \

go run main.go -h

This is used to estimate the alignment according to the specified sequence

Usage:

  flags [flags]

Flags:

  -a, --alignment string     alignment file (default "alignment file to be used for the estimate")

  -h, --help                 help for flags

  -s, --refsequence string   reference sequence (default "sequence to be used as reference")

```

Gaurav Sablok