https://github.com/applicativesystem/rust-alignment-viewer

rust embedded approach for genome alignments
https://github.com/applicativesystem/rust-alignment-viewer

bioinformatics genome-alignment genome-analysis rust-crate rust-lang

Last synced: 16 days ago
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rust embedded approach for genome alignments

• Host: GitHub
• URL: https://github.com/applicativesystem/rust-alignment-viewer
• Owner: applicativesystem
• License: mit
• Created: 2024-11-25T22:19:38.000Z (about 1 month ago)
• Default Branch: master
• Last Pushed: 2024-12-13T16:50:32.000Z (18 days ago)
• Last Synced: 2024-12-13T17:48:51.246Z (18 days ago)
• Topics: bioinformatics, genome-alignment, genome-analysis, rust-crate, rust-lang
• Language: Rust
• Homepage:
• Size: 3.48 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
# rust-alignment-viewer

- a embedded colour coded rust visualization approach for the multiple sequence alignment. 

- upgraded this crate to the complete version so that it now allows from the shorter alignments to large scale alignments in one crate. 

- general note: incase of golang and RUST, please see the last commit message and if the message says final and binary released, means code completed else in development phase. 

![](https://github.com/applicativesystem/rust-view-aln/blob/master/alignment_spliced_alignment.png)

```

cargo build

```

```

λ gauravsablok rust-alignment-viewer → λ git master* → ./rust-alignment-viewer -h

Usage: rust-alignment-viewer  [START_ALIGNMENT] [END_ALIGNMENT]

Arguments:

      please provide the path to the alignment file

  [START_ALIGNMENT]  pleasr provide the start of the clipped alignment

  [END_ALIGNMENT]    please provide the end of the clipped alignment

Options:

  -h, --help     Print help

  -V, --version  Print version

```

```

  ./target/debug/rust-alignment-viewer ./sample-files/sample.fasta 2 18

```

Gaurav Sablok