https://github.com/applicativesystem/rust-bwt-algorithm

rust implementation of Burrows-Wheeler transform
https://github.com/applicativesystem/rust-bwt-algorithm

Last synced: 10 months ago
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rust implementation of Burrows-Wheeler transform

• Host: GitHub
• URL: https://github.com/applicativesystem/rust-bwt-algorithm
• Owner: applicativesystem
• License: mit
• Created: 2024-12-14T08:26:44.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2024-12-14T21:25:23.000Z (over 1 year ago)
• Last Synced: 2024-12-14T22:25:10.335Z (over 1 year ago)
• Language: Rust
• Size: 1000 Bytes
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# rust-bwt-algorithm

 

 - rust implementation of Burrows-Wheeler transform for long range sequencing as well as the short reads.

 - writing the Burrows-Wheeler transform in RUST all parts separate later for merge into RUST-bowtie.

 - in this i implement a struct based approach so that based on the sorted keys i can push them into a BTreeMap, which will make them on a log scale much faster.  

 - general note: Incase of Golang and RUST, please see the last commit message and if it says compiled binary then it is completed or else still in development version. 

```

cargo build

```

```

➜  rust-bwt-algorithm git:(main) ✗ ./target/debug/rust-bwt-algorithm -h

Usage: rust-bwt-algorithm 

Arguments:

    please provide the path to the fastq file

Options:

  -h, --help     Print help

  -V, --version  Print version

``` 

 Gaurav Sablok