https://github.com/applicativesystem/rust-fastp-sync
rustic version of fastp each fastp subcommand in a separate multithreaded application
https://github.com/applicativesystem/rust-fastp-sync
bioinformatics bioinformatics-analysis genome-analysis genome-sequencing illumina illumina-sequencing
Last synced: about 2 months ago
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rustic version of fastp each fastp subcommand in a separate multithreaded application
- Host: GitHub
- URL: https://github.com/applicativesystem/rust-fastp-sync
- Owner: applicativesystem
- License: mit
- Created: 2024-11-19T19:21:07.000Z (11 months ago)
- Default Branch: main
- Last Pushed: 2024-11-20T17:02:11.000Z (11 months ago)
- Last Synced: 2024-11-20T17:41:39.439Z (11 months ago)
- Topics: bioinformatics, bioinformatics-analysis, genome-analysis, genome-sequencing, illumina, illumina-sequencing
- Language: Rust
- Homepage:
- Size: 5.86 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# rust-fastp
- rustic version of fastp each fastp subcommand in a separate multithreaded application
- this part implements the read sync for the fastp.
- making each part multihreaded using rayon.
```
cargo build
```
- to check the order
```
./target/debug/rust-fastp ./sample-files/ordered-files/samp2_L001_R1_001.fastq
./sample-files/ordered-files/samp2_L001_R2_001.fastq
```
- on unordered files
```
./target/debug/rust-fastp ./sample-files/ordered-files/unamp2_L001_R1_001.fastq
./sample-files/unordered-files/samp2_L001_R2_001.fastq
```
Gaurav Sablok