https://github.com/applicativesystem/rust-pangenome-harmonic-mean

rust pangenome harmonic mean
https://github.com/applicativesystem/rust-pangenome-harmonic-mean

bioinformatics genome-bioinformatics pangenome pangenome-alignment pangenome-inference

Last synced: 4 months ago
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rust pangenome harmonic mean

• Host: GitHub
• URL: https://github.com/applicativesystem/rust-pangenome-harmonic-mean
• Owner: applicativesystem
• License: mit
• Created: 2024-12-11T20:39:57.000Z (4 months ago)
• Default Branch: main
• Last Pushed: 2024-12-12T19:04:36.000Z (4 months ago)
• Last Synced: 2024-12-12T20:20:23.054Z (4 months ago)
• Topics: bioinformatics, genome-bioinformatics, pangenome, pangenome-alignment, pangenome-inference
• Language: Rust
• Homepage:
• Size: 2.97 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# rust-pangenome-harmonic-mean

 - writing all pangenome tools in rust. 

 - This part estimates the harmoninc mean of the given snps across the indiviuals. 

 ```

 cargo build

 

 ```

λ gauravsablok rust-pangenome-harmonic-mean → λ git main* → ./rust-pangenome-harmonic-mean -h

Usage: rust-pangenome-harmonic-mean 

Arguments:

    please provide the path to the snp estimation file across the pangenome

Options:

  -h, --help     Print help

  -V, --version  Print version

 ```

 ```

 - to run the binary

 ```

  ./rust-pangenome-harmonic-mean ./sample-files/sample.txt 

 ```

 Gaurav Sablok