https://github.com/applicativesystem/rust-pangenome-tools

rust deeplearning and segmentation from the aligned reads
https://github.com/applicativesystem/rust-pangenome-tools

Last synced: 7 months ago
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rust deeplearning and segmentation from the aligned reads

• Host: GitHub
• URL: https://github.com/applicativesystem/rust-pangenome-tools
• Owner: applicativesystem
• License: mit
• Created: 2024-12-08T18:29:37.000Z (7 months ago)
• Default Branch: main
• Last Pushed: 2024-12-10T06:36:59.000Z (7 months ago)
• Last Synced: 2024-12-10T07:40:53.153Z (7 months ago)
• Size: 1.95 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# rust-pangenome-tools

 - writing all pangenome tools in rust. 

 - This part summarizes all the pangenome alignments. 

 - estimates and gives all descriptive statistics on the pangenome alignment. 

 - general note: Incase of Golang and RUST, please see the last commit message and if it says compiled binary then it is completed or else still in development version.

 ```

 cargo build

 

 ```

 ```

 λ gauravsablok rust-pangenome-tools → λ git main* → ./rust-pangenome-tools -h

 Usage: rust-pangenome-tools 

 Arguments:

    please provide the path to the alignment file

 Options:

  -h, --help     Print help

  -V, --version  Print version

 ```

 - to run the binary

 ```

 λ fedora rust-pangenome-tools → λ git main* → ./target/debug/rust-pangenome-tools ./sample-files/sample.paf

 The total reference aligned sum for the pangenome is 126794249

 The total reference portion of the aligned query is 127158955

 The mode for the reference pangenome alignment is: 612532

 The mode for the query pangenome alignment is 614294

 The pangenome statistics analyzer: The paf analyzer has finished and all the pangenome alignment statistics are given below:

 ```

 Gaurav Sablok