https://github.com/applicativesystem/rust-samtools-generateid-range
rust-samtools generateid range
https://github.com/applicativesystem/rust-samtools-generateid-range
bioinformatics genome-alignment genome-analysis genome-sequence-analysis indexeddb rust-lang samtools
Last synced: 10 months ago
JSON representation
rust-samtools generateid range
- Host: GitHub
- URL: https://github.com/applicativesystem/rust-samtools-generateid-range
- Owner: applicativesystem
- License: mit
- Created: 2024-12-04T07:11:55.000Z (over 1 year ago)
- Default Branch: main
- Last Pushed: 2024-12-04T21:33:08.000Z (over 1 year ago)
- Last Synced: 2024-12-04T22:30:33.471Z (over 1 year ago)
- Topics: bioinformatics, genome-alignment, genome-analysis, genome-sequence-analysis, indexeddb, rust-lang, samtools
- Language: Rust
- Homepage:
- Size: 1000 Bytes
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# rust-samtools-generateid-range
- rust-samtools generateid range
- rust samtools generateid range will only generate the fastidx for the specified range for the use with the other rust-samtools.
- The difference between this and the rust-samtools-generateid is that rust-samtools-generateid for all the identifiers whereas in this you can specify a start and stop coordinate and it will generate only the fastidx for those range and not for the whole sam file.
- general note: Incase of Golang and RUST, please see the last commit message and if it says compiled binary then it is completed or else still in development version.
```
cargo build
```
```
./target/debug/rust-samtools-generateid-range
./sample-files/alignreads-metagenomics.sam 540849 613960
```
Gaurav Sablok