https://github.com/applicativesystem/rust-view-aln-wasm
rust embedded approach for genome alignments to wasm web assembly
https://github.com/applicativesystem/rust-view-aln-wasm
bioinformatics genome-analysis genome-assembly genome-browser rust-crate rustlang webassembly webassembly-lang
Last synced: 6 months ago
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rust embedded approach for genome alignments to wasm web assembly
- Host: GitHub
- URL: https://github.com/applicativesystem/rust-view-aln-wasm
- Owner: applicativesystem
- License: mit
- Created: 2024-11-27T22:23:13.000Z (6 months ago)
- Default Branch: main
- Last Pushed: 2024-11-27T22:40:11.000Z (6 months ago)
- Last Synced: 2024-11-27T23:24:52.786Z (6 months ago)
- Topics: bioinformatics, genome-analysis, genome-assembly, genome-browser, rust-crate, rustlang, webassembly, webassembly-lang
- Language: Rust
- Homepage:
- Size: 179 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# rust-view-multi-aln
- started a webassembly approach for genomic alignments for plants and metagenomes.
- will convert this with additional svelte into a complete biowasm web assembly, so give any BAM, CRAM, SAM file and it will show the genome.
- from reads to entire genome and metagenome visualization.
- it will make the alignments specific for each file and in case of the BAM, SAM and others will also integrate the Gosling.
- **Svelete Integration to follow for the complete webassembly based genome browser as of now it uses simple browser.**
- general note: incase of golang and RUST, please see the last commit message and if the message says final and binary released, means code completed else in development phase.
```
cargo build
```
```
λ gauravsablok rust-view-multi-aln → λ git master* → ./target/debug/rust-view-multi-aln -h
Usage: rust-view-multi-aln
Arguments:
please provide the path to the alignment file
Options:
-h, --help Print help
-V, --version Print version
```
Gaurav Sablok