https://github.com/astrazeneca/inspectumours
This is a shiny tool to classify and analyse pre-clinical tumour data automatically.
https://github.com/astrazeneca/inspectumours
Last synced: 8 months ago
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This is a shiny tool to classify and analyse pre-clinical tumour data automatically.
- Host: GitHub
- URL: https://github.com/astrazeneca/inspectumours
- Owner: AstraZeneca
- License: other
- Created: 2022-03-09T13:23:17.000Z (over 4 years ago)
- Default Branch: main
- Last Pushed: 2023-03-23T10:03:57.000Z (about 3 years ago)
- Last Synced: 2025-09-09T11:51:13.491Z (9 months ago)
- Language: R
- Size: 989 KB
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 2
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- Contributing: CONTRIBUTING.md
- License: LICENSE.md
- Authors: AUTHORS.md
Awesome Lists containing this project
README
IN-vivo reSPonsE Classification of Tumours (INSPECTumours)
=================================================================================
[](https://cran.r-project.org/package=INSPECTumours)
[](https://github.com/AstraZeneca/INSPECTumours/actions)
The package was built under R version 4.1.1
# Project information
This is a shiny tool to classify and analyse pre-clinical tumour data automatically.
# Software requirements
Depends:
R (>= 3.5.0)
Imports:
brms,
dplyr,
DT,
ggeffects,
ggplot2,
knitr,
lme4,
modelr,
pander,
plotly,
purrr,
readxl,
rlang,
rmarkdown,
shiny,
shinyalert,
shinyFeedback,
shinyjs,
shinytoastr,
shinyvalidate,
tidybayes,
tippy,
tidyr,
vroom,
waiter
# How to use
In order to use this package, please follow the instruction below.
## Install from CRAN
```r
install.packages("INSPECTumours")
```
## R 4.2 on Windows
The Rstan is a dependancy of the brms package that is used to build models in the app.
[The current CRAN Rstan (version 2.21.5) does not work with R 4.2 on Windows.](https://blog.mc-stan.org/2022/04/26/stan-r-4-2-on-windows/)
You need to install rstan and StanHeaders packages from the Stan R package repository.
```r
# if you have installed packages from CRAN
remove.packages(c("rstan", "StanHeaders"))
install.packages("rstan", repos = c("https://mc-stan.org/r-packages/", getOption("repos")))
```
## Install from github (development version)
```r
if (!requireNamespace("devtools", quietly = TRUE))
install.packages("devtools")
devtools::install_github("AstraZeneca/INSPECTumours")
```
## Run App
```r
library(INSPECTumours)
run_app()
```
# Development
## Work with a source code
```r
# re-load all code after changes
devtools::load_all()
run_app()
```
## Run Tests
```r
devtools::test()
```
## Run github check for package
```r
usethis::use_github_action_check_standard()
```