https://github.com/ax3man/phylopath

Perform phylogenetic path analysis in R.
https://github.com/ax3man/phylopath

analysis comparative-methods path phylogenetics r rstats

Last synced: about 1 month ago
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Perform phylogenetic path analysis in R.

• Host: GitHub
• URL: https://github.com/ax3man/phylopath
• Owner: Ax3man
• Created: 2016-08-08T14:09:18.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2024-09-19T16:48:51.000Z (3 months ago)
• Last Synced: 2024-10-28T17:32:53.028Z (about 2 months ago)
• Topics: analysis, comparative-methods, path, phylogenetics, r, rstats
• Language: R
• Homepage: https://ax3man.github.io/phylopath/
• Size: 17.7 MB
• Stars: 11
• Watchers: 4
• Forks: 3
• Open Issues: 2
• Metadata Files:
  • Readme: README.md

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README

        
# phylopath

[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/phylopath)](https://cran.r-project.org/package=phylopath) [![Cran downloads](http://cranlogs.r-pkg.org/badges/grand-total/phylopath)](http://cran.rstudio.com/web/packages/phylopath/index.html) [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)

This package implements phylogenetic path analysis in R.

Install the package using:

```{r}

install.packages("phylopath")

```

You may need to install the downstream dependency `graph` from Bioconductor:

```{r}

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")

BiocManager::install("graph")

```

Or if you'd like to install the development version (here on github), use:

```{r}

remotes::install_github("Ax3man/phylopath")

```

It's easiest to start on the [website](https://ax3man.github.io/phylopath) and first read the introduction [here](https://ax3man.github.io/phylopath/articles/intro_to_phylopath.html), or read the [paper in PeerJ](https://doi.org/10.7717/peerj.4718).

If you find any problems, or if you have suggestions for improvements, please file those under [issues](/issue). PRs welcome.