https://github.com/baderlab/baderlab_static_webservers
repo with dockers for each of the static baderlab servers
https://github.com/baderlab/baderlab_static_webservers
Last synced: 5 months ago
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repo with dockers for each of the static baderlab servers
- Host: GitHub
- URL: https://github.com/baderlab/baderlab_static_webservers
- Owner: BaderLab
- Created: 2023-06-19T16:15:25.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2023-10-27T19:42:00.000Z (over 2 years ago)
- Last Synced: 2025-04-08T22:32:09.381Z (about 1 year ago)
- Language: Dockerfile
- Size: 34.2 KB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
There are 6 static BaderLab static websites. Each site is in a stand alone virtual machine running old software. This repo is the documentation on the new versions of these old static websites.
The websites are:
1. POW (pow.baderlab.org) - 192.168.81.143
2. PRM-DB (prm-db.org) - 192.168.81.192
3. pathguide (pathguide.org) - 192.168.81.175
4. DV-IMPACT (dvimpact.baderlab.org / canvd.baderlab.org) - 192.168.81.189
5. MIMP (mimp.baderlab.org) - 192.168.81.141
6. cytoscape wiki (wikiold.cytoscape.org) - 192.168.81.131
Each site has been converted over to a docker and is now running newer versions of software. All servers are running on ubuntu OS and using APT for package managment.
The corresponding dockers are:
1. POW - [iweinberger/pow](https://hub.docker.com/repository/docker/iweinberger/pow/general)
2. PRM-DB - [iweinberger/prm-db](https://hub.docker.com/repository/docker/iweinberger/prm-db/general)
3. pathguide - [iweinberger/pathguide](https://hub.docker.com/repository/docker/iweinberger/pathguide/general)
4. DV-IMPACT - [iweinberger/dv-impact](https://hub.docker.com/repository/docker/iweinberger/dv-impact/general)
5. MIMP - [iweinberger/mimp](https://hub.docker.com/repository/docker/iweinberger/mimp/general)
6. cytoscape wiki - [iweinberger/cytoscape-wiki-old](https://hub.docker.com/repository/docker/iweinberger/cytoscape-wiki-old/general)
Each docker can be downloaded and run through Docker user the command `docker run -ditp 80:80 **container_name**`.
Each site has it's own Docker image however all 6 sites have also been combined into one docker image which can be found at iweinberger/all-baderlab-sites(https://hub.docker.com/repository/docker/iweinberger/all-baderlab-sites/general)
POW:
POW is a website that allows users to predict PDZ domain-peptide interactions for human, mouse, worm and fly PDZ domains.
Software:
- python2.7
- svm
- apache2
- apache2 cgi
PRM-BD:
PRM-DB allows users to search for a domain or protein by name, all domains from a given species, all members of a domain family, or search for combinations of these criteria.
Software:
- apache2
- mySQL
- PHP
- php-mysql
- libapache2-mod-php
DV-IMPACT:
DV-IMPACT is a resource for the disease variants impact assessment on domain-peptide PPI networks
Software:
- apache2
- mySQL
- PHP
- php-mysql
- libapache2-mod-php
Pathguide:
Pathguide is a database that contains information about 702 biological pathway related resources and molecular interaction related resources
- apache2
- mySQL
- PHP
- php-mysql
- libapache2-mod-php
MIMP:
MIMP characterizes genetic variants such as cancer mutations that specifically alter kinase-binding sites in proteins.
Software:
- Nginx
- Java 8
- openjdk-8-jre
- openjdk-8-jdk
- Play 2.2.1
- R 3.6.3
- gcc 9.4.0
- Make
- gfortran
- Flex
- Autogen
- gcc-multilib
- Libcurl4-openssl-dev
Cytoscape wiki (old):
Old wiki for cytoscape.
- apache2
- python2
- MoinMoin
- libapache2-mod-wsgi-py3