https://github.com/baderlab/singlelivercells
Scripts for processing single liver cells RNA-Seq 10X Genomics Data
https://github.com/baderlab/singlelivercells
Last synced: about 1 year ago
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Scripts for processing single liver cells RNA-Seq 10X Genomics Data
- Host: GitHub
- URL: https://github.com/baderlab/singlelivercells
- Owner: BaderLab
- Created: 2018-06-01T13:36:08.000Z (about 8 years ago)
- Default Branch: master
- Last Pushed: 2018-10-17T18:37:20.000Z (over 7 years ago)
- Last Synced: 2024-03-26T13:45:42.779Z (about 2 years ago)
- Language: R
- Size: 84.5 MB
- Stars: 22
- Watchers: 15
- Forks: 11
- Open Issues: 1
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Metadata Files:
- Readme: README.md
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README
# singleLiverCells
Scripts for processing single liver cells RNA-Seq 10X Genomics Data
The 20 Clusters of total Liver cells were determined by the package "Seurat" in R using the following parameters:
FindClusters(Data,pc.use=1:29,print.output=F,save.SNN=T,resolution=0.8)
The 9 Clusters of Immune Cell Subset of Liver were determined by the package "Seurat" in R using the following parameters:
FindClusters(Data,pc.use=1:9,print.output=F,save.SNN=T,resolution=0.4)