https://github.com/barricklab/breseq-gui
Electron GUI for breseq
https://github.com/barricklab/breseq-gui
Last synced: 4 months ago
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Electron GUI for breseq
- Host: GitHub
- URL: https://github.com/barricklab/breseq-gui
- Owner: barricklab
- License: mit
- Created: 2020-05-09T22:32:39.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2023-09-06T11:14:02.000Z (almost 3 years ago)
- Last Synced: 2025-09-09T16:02:58.481Z (11 months ago)
- Language: JavaScript
- Homepage:
- Size: 7.49 MB
- Stars: 4
- Watchers: 2
- Forks: 1
- Open Issues: 7
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# breseq-gui
This package provides a MacOS X graphical user interface for running the [_breseq_](https://github.com/barricklab/breseq) pipeline for predicting mutations in microbial genomes.
Currently, you must [install _breseq_](https://barricklab.org/twiki/pub/Lab/ToolsBacterialGenomeResequencing/documentation/installation.html) on your own and make sure that it and its prerequisites (R and bowtie2) are all in your `$PATH` to use `breseq-gui`.
The easiest way to do this if you are not familiar with the command line is to use these directions in the Terminal to [install BioConda](https://bioconda.github.io/) and then [install the _breseq_ recipe](http://bioconda.github.io/recipes/breseq/README.html). This will automatically install and set up everything that you need.
If you get errors related to R when running _breseq_ installed through conda, run this additional command to fix them:
```
conda update -c rdonnellyr -c main --all
```
## Developer Quick Start
`breseq-gui` is an [Electron Forge](https://www.electronforge.io/) project. For development, you will need to [install npm](https://www.npmjs.com/get-np) and then [install Electron](https://www.electronjs.org/docs/tutorial/installation).
You should now be able to run this command from the main source directory to launch the repository version of **breseq-gui**:
```
npm start
```