https://github.com/bcbi/awesome-pubmed-webapps
A collection of tools that search, mine and visualize biomedical literature
https://github.com/bcbi/awesome-pubmed-webapps
List: awesome-pubmed-webapps
Last synced: 7 months ago
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A collection of tools that search, mine and visualize biomedical literature
- Host: GitHub
- URL: https://github.com/bcbi/awesome-pubmed-webapps
- Owner: bcbi
- License: mit
- Created: 2018-11-08T16:58:07.000Z (over 7 years ago)
- Default Branch: master
- Last Pushed: 2018-11-26T03:34:51.000Z (over 7 years ago)
- Last Synced: 2025-03-23T14:01:36.453Z (over 1 year ago)
- Size: 7.81 KB
- Stars: 1
- Watchers: 8
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# Awesome PubMed Web Applications
We intend to maintain a list of web applications that search, mine and visualize biomedical literature. Only tools that are currently deployed and functioning propertly should be included. If you would like to add your work or update any of the information please submit a pull request or open an issue.
**Notes on attributes:**
* Publication: Referes to most recent related publication
* Year: Refers to year of most recent related publication
## References
We are aware that this list is by no means complete and we invite the community to contribute.
The initial list was inspired by this work https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/search/
## Academic
|Systems| Search | Mining | Visualization |Publication| Year |
| --- | --- | --- | --- | --- | --- |
|[HiPub](http://hipub.korea.ac.kr/) | x | x | x | [27485446](https://www.ncbi.nlm.nih.gov/pubmed/27485446) | 2016 |
|[Meshable](https://www.ncbi.nlm.nih.gov/CBBresearch/Wilbur/IRET/MESHABLE/)|x|||[27288493](https://www.ncbi.nlm.nih.gov/pubmed/27288493)|2016|
|[iPubMed](http://ipubmed.ics.uci.edu) | x | | | [Link](http://ipubmed.ics.uci.edu/pubs/) | 2014 |
|[MedlineRanker](http://cbdm-01.zdv.uni-mainz.de/~jfontain/cms/) | x | | |[19429696](https://www.ncbi.nlm.nih.gov/pubmed/19429696) | 2009 |
|[MEDSUM](http://webtools.mf.uni-lj.si/public/medsum.html)| x | x | x | | 2009 |
|[CISMeF](http://www.cismef.org/) | x | | | [18694229](https://www.ncbi.nlm.nih.gov/pubmed/18694229)|2007
|[PubNet](http://pubnet.gersteinlab.org/) | x | x | x | [16168087](https://www.ncbi.nlm.nih.gov/pubmed/16168087) | 2005 |
|[PubCrawler](http://pubcrawler.gen.tcd.ie/) | x | | | [15215341](https://www.ncbi.nlm.nih.gov/pubmed/15215341) | 2004 |
|[Chilibot](http://www.chilibot.net)|x|x|x|[15473905](https://www.ncbi.nlm.nih.gov/pubmed/15473905)|2004|
## Government
|Systems| Search | Mining | Visualization |Publication| Year |
|---|---|---|---|---|---|
|[EuropePMC](https://europepmc.org) | x | | | |
|[Semantic MEDLINE](https://skr3.nlm.nih.gov/SemMed/index.html)|x|x|x|[Link](https://skr3.nlm.nih.gov/SemMedDB/Rindflesch2011.pdf)|2011|
|[BabelMeSH](https://babelmesh.nlm.nih.gov) | x | | | [17238631](https://www.ncbi.nlm.nih.gov/pubmed/17238631) | 2006 |
|[askMEDLINE](http://askmedline.nlm.nih.gov/ask/ask.php) | x | | |[15760470](https://www.ncbi.nlm.nih.gov/pubmed/15760470) | 2005|
|[SLIM](https://pmi.nlm.nih.gov/slim/) | x | | | [16321145](https://www.ncbi.nlm.nih.gov/pubmed/16321145) | 2005 |
## Private
|Systems | Search | Mining | Visualization | Publication| Year |
|---|---|---|---|---|---|
|[NextBio](http://www.nextbio.com/b/search/lit.nb)|x|x|x|||
|[CoreMineMedical](http://www.coremine.com/medical/#search)|x|x|x|||
|[BibliMed](http://biblimed.fr/) | x | | | | |
|[Quertle](http://www.quertle.info) | x | x | x | | |
|[HubMed](http://git.macropus.org/hubmed/) | x | | | [16845111](https://www.ncbi.nlm.nih.gov/pubmed/16845111) | 2006 |
|[GoPubMed](https://www.gopubmed.org/) | x | x | x | [15980585](https://www.ncbi.nlm.nih.gov/pubmed/15980585) | 2005 |