https://github.com/bcbi/bcbi-base
https://github.com/bcbi/bcbi-base
Last synced: 7 months ago
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- Host: GitHub
- URL: https://github.com/bcbi/bcbi-base
- Owner: bcbi
- License: mit
- Created: 2019-05-20T08:23:33.000Z (about 7 years ago)
- Default Branch: master
- Last Pushed: 2020-02-09T01:05:58.000Z (over 6 years ago)
- Last Synced: 2025-02-02T01:27:38.906Z (over 1 year ago)
- Language: Julia
- Size: 24.4 KB
- Stars: 0
- Watchers: 6
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Codeowners: CODEOWNERS
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README
# BCBI-base: Julia packages commonly used by the Brown Center for Biomedical Informatics (BCBI)
[](https://app.bors.tech/repositories/12341)
[](https://travis-ci.org/bcbi/BCBI-base/branches)
## Usage
```bash
cd /path/to/desired/location
git clone https://github.com/bcbi/BCBI-base
cd BCBI-base
julia --project install.jl
```
## Creating custom environments
It is easy to create custom environments that contain any combination of packages.
```bash
mkdir my_environment_name
cd my_environmnent_name
touch Project.toml
julia —-project
```
Now that you are in Julia, you can add the specific combination of packages that you want. For example, the following commands will add `DecisionTree`, `GLM`, and `PredictMD` to your environment:
```julia
import Pkg
Pkg.add([“DecisionTree”, “GLM”, “PredictMD”,])
```
## Troubleshooting
If you encounter an error, try running the following two lines:
```bash
julia --project clean.jl
julia --project install.jl
```
If this does not resolve the error, try running the following three lines:
```bash
rm -rf $HOME/.julia
julia --project clean.jl
julia --project install.jl
```
If you are still encountering an error, please [open a new issue](https://github.com/bcbi/BCBI-base/issues/new).