https://github.com/bedops/bedops

:microscope: BEDOPS: high-performance genomic feature operations
https://github.com/bedops/bedops

bed bedops bioinformatics c c-plus-plus compression conversion genomics parallel pipeline set set-theory toolkit

Last synced: 19 days ago
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:microscope: BEDOPS: high-performance genomic feature operations

• Host: GitHub
• URL: https://github.com/bedops/bedops
• Owner: bedops
• License: other
• Created: 2013-09-18T19:43:30.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2024-01-28T01:11:29.000Z (about 1 year ago)
• Last Synced: 2025-03-28T18:07:10.352Z (26 days ago)
• Topics: bed, bedops, bioinformatics, c, c-plus-plus, compression, conversion, genomics, parallel, pipeline, set, set-theory, toolkit
• Language: C
• Homepage: https://bedops.readthedocs.io/
• Size: 92.5 MB
• Stars: 319
• Watchers: 16
• Forks: 61
• Open Issues: 19
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE
  • Citation: CITATION.cff

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README

        
## BEDOPS v2.4.41: high-performance genomic feature operations ##

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### About ###

**BEDOPS v2.4.41** is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data. 

The overview section of the **BEDOPS v2.4.41** documentation summarizes the toolkit, functionality and performance enhancements. The reference table offers documentation for all applications and scripts.

### Downloads ###

Linux

Mac OS X

Source code





x86-64 (64-bit) binaries



Installation instructions for Linux hosts







Intel/Rosetta (64-bit, 10.10-11.4) installer package



Installation instructions for Mac OS X hosts







Source code (tar.gz)



Source code (zip)

Compilation instructions



### Documentation ###

Complete documentation for **BEDOPS v2.4.41** tools is available at: https://bedops.readthedocs.io/

### Citation ###

If you use **BEDOPS v2.4.41** in your research, please cite the following manuscript:

> Shane Neph, M. Scott Kuehn, Alex P. Reynolds, et al.  

> [**BEDOPS: high-performance genomic feature operations**  

> *Bioinformatics* (2012) 28 (14): 1919-1920.] (http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract)

### Copyright ###

> Copyright (C) 2011-2022 Shane J. Neph, M. Scott Kuehn and Alex P. Reynolds

>

> Source code, documentation and media assets released under GNU Public License Version 2 (GPL v2).