https://github.com/berenslab/umi-normalization
Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
https://github.com/berenslab/umi-normalization
dimensionality-reduction gene-selection glm-pca negative-binomial negative-binomial-model negative-binomial-regression normalization scrna single-cell-analysis single-cell-rna-seq t-sne umi-count umi-count-matrix
Last synced: 22 days ago
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Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
- Host: GitHub
- URL: https://github.com/berenslab/umi-normalization
- Owner: berenslab
- License: agpl-3.0
- Created: 2020-10-15T13:14:35.000Z (over 5 years ago)
- Default Branch: main
- Last Pushed: 2022-05-06T14:26:24.000Z (almost 4 years ago)
- Last Synced: 2025-09-09T15:04:43.796Z (6 months ago)
- Topics: dimensionality-reduction, gene-selection, glm-pca, negative-binomial, negative-binomial-model, negative-binomial-regression, normalization, scrna, single-cell-analysis, single-cell-rna-seq, t-sne, umi-count, umi-count-matrix
- Language: Jupyter Notebook
- Homepage: https://doi.org/10.1186/s13059-021-02451-7
- Size: 89.2 MB
- Stars: 40
- Watchers: 7
- Forks: 2
- Open Issues: 2
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Metadata Files:
- Readme: README.md
- License: LICENSE