https://github.com/bioarchlinux/packages
Aim to be the bioinformatics repository with more and newer packages
https://github.com/bioarchlinux/packages
archlinux bioinformatics linux linux-distribution packages repository
Last synced: 18 days ago
JSON representation
Aim to be the bioinformatics repository with more and newer packages
- Host: GitHub
- URL: https://github.com/bioarchlinux/packages
- Owner: BioArchLinux
- License: agpl-3.0
- Created: 2021-08-10T14:16:30.000Z (over 3 years ago)
- Default Branch: master
- Last Pushed: 2024-10-29T21:42:29.000Z (6 months ago)
- Last Synced: 2024-10-29T23:37:40.590Z (6 months ago)
- Topics: archlinux, bioinformatics, linux, linux-distribution, packages, repository
- Language: Shell
- Homepage: https://bioarchlinux.org/packages
- Size: 100 MB
- Stars: 82
- Watchers: 5
- Forks: 9
- Open Issues: 2
-
Metadata Files:
- Readme: README.md
- Funding: .github/FUNDING.yml
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Citation: CITATION.cff
Awesome Lists containing this project
README
BioArchLinux
Packages Wiki Matrix Mirror Repo Status
## Special sponsor
## Usage
### ArchLinux and ArchLinux based distributions
Add the following content to the `/etc/pacman.conf`
```
[bioarchlinux]
Server = https://repo.bioarchlinux.org/$arch
```
You can replace the `https://repo.bioarchlinux.org/$arch` with any mirror in [mirrorlist](https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio)
install GPG keyring to use bioarchlinux
```
# pacman-key --recv-keys B1F96021DB62254D
# pacman-key --finger B1F96021DB62254D
# pacman-key --lsign-key B1F96021DB62254D
```
update the database
```
# pacman -Syu
```
install any package
```
# pacman -S foo
```
### Windows
You can use [WSL](https://docs.microsoft.com/en-us/windows/wsl/install) to use our repo, see [here](https://github.com/BioArchLinux/wsl)
### Docker
You can use [docker](https://hub.docker.com/r/bioarchlinux/bioarchlinux) to use our repo, see [here](https://github.com/BioArchLinux/docker)
### ISO
You can use ISO image via virtual machine software to use our repo, see [here](https://github.com/BioArchLinux/iso)
### non-root Linux users
You can use [junest](https://github.com/fsquillace/junest) BioArchLinux image to use our repo, see [here](https://github.com/BioArchLinux/junest-img)
## Citation
> Zhang G, Ristola P, Su H, Kumar B, Zhang B, Hu Y, Elliot MG, Drobot V, Zhu J, Staal J, Larralde M, Wang S, Yi Y, Yu H. 2025. BioArchLinux: community-driven fresh reproducible software repository for life science. Bioinformatics: btaf106. https://doi.org/10.1093/bioinformatics/btaf106
>
> Zhang G, Hu Y, Drobot V, Staal J, Yi Y, Elliot MG. 2022. BioArchLinux: bioinformatics community with Arch Linux. F1000Research 11: 809. https://doi.org/10.7490/f1000research.1119039.1
[Get Bibtex Here](https://raw.githubusercontent.com/BioArchLinux/Packages/master/BioArchLinux.bibtex)
## Submitting packages
Those wishing to submit 'PKGBUILD' for packages to repo please refer to [adding packages](/Documentation/adding%20packages.md) document