Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/bioarchlinux/packages
Aim to be the bioinformatics repository with more and newer packages
https://github.com/bioarchlinux/packages
archlinux bioinformatics linux linux-distribution packages repository
Last synced: about 1 month ago
JSON representation
Aim to be the bioinformatics repository with more and newer packages
- Host: GitHub
- URL: https://github.com/bioarchlinux/packages
- Owner: BioArchLinux
- License: agpl-3.0
- Created: 2021-08-10T14:16:30.000Z (over 3 years ago)
- Default Branch: master
- Last Pushed: 2024-04-14T00:04:56.000Z (7 months ago)
- Last Synced: 2024-04-14T00:50:13.942Z (7 months ago)
- Topics: archlinux, bioinformatics, linux, linux-distribution, packages, repository
- Language: Shell
- Homepage: https://bioarchlinux.org/packages
- Size: 88.6 MB
- Stars: 79
- Watchers: 5
- Forks: 10
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Funding: .github/FUNDING.yml
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Citation: CITATION.cff
Awesome Lists containing this project
README
BioArchLinux
Packages Wiki Matrix Mirror Repo Status
## Special sponsor
## Usage
### ArchLinux and ArchLinux based distributions
Add the following content to the `/etc/pacman.conf`
```
[bioarchlinux]
Server = https://repo.bioarchlinux.org/$arch
```
You can replace the `https://repo.bioarchlinux.org/$arch` with any mirror in [mirrorlist](https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio)
install GPG keyring to use bioarchlinux
```
# pacman-key --recv-keys B1F96021DB62254D
# pacman-key --finger B1F96021DB62254D
# pacman-key --lsign-key B1F96021DB62254D
```
update the database
```
# pacman -Syu
```
install any package
```
# pacman -S foo
```
### Windows
You can use [WSL](https://docs.microsoft.com/en-us/windows/wsl/install) to use our repo, see [here](https://github.com/BioArchLinux/wsl)
### Docker
You can use [docker](https://hub.docker.com/r/bioarchlinux/bioarchlinux) to use our repo, see [here](https://github.com/BioArchLinux/docker)
### ISO
You can use ISO image via virtual machine software to use our repo, see [here](https://github.com/BioArchLinux/iso)
### non-root Linux users
You can use [junest](https://github.com/fsquillace/junest) BioArchLinux image to use our repo, see [here](https://github.com/BioArchLinux/junest-img)
## Citation
> Zhang G. Hu Y. Drobot V. Staal J. Yi Y. Elliot MG. 2022. BioArchLinux: bioinformatics community with Arch Linux. F1000Research 11: 809. https://doi.org/10.7490/f1000research.1119039.1
[Get Bibtex Here](https://raw.githubusercontent.com/BioArchLinux/Packages/master/BioArchLinux.bibtex)