https://github.com/biocpy/biocworkshop2024

https://github.com/biocpy/biocworkshop2024

bioconductor biocpy rpython

Last synced: 24 days ago
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• Host: GitHub
• URL: https://github.com/biocpy/biocworkshop2024
• Owner: BiocPy
• Created: 2024-06-04T14:47:54.000Z (7 months ago)
• Default Branch: master
• Last Pushed: 2024-07-24T03:52:15.000Z (5 months ago)
• Last Synced: 2024-07-25T02:28:41.627Z (5 months ago)
• Topics: bioconductor, biocpy, rpython
• Language: Jupyter Notebook
• Homepage: https://biocpy.github.io/BiocWorkshop2024/
• Size: 8.37 MB
• Stars: 0
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
## Bioc 2024 workshop tutorial

This is a reproducible Quarto book with reusable snippets. If you're new to Quarto books, you can explore more about them [here](https://quarto.org/docs/books). 

## Setting Up the Tutorial Locally

To get started locally, follow these steps:

- Install [quarto-cli](https://quarto.org/docs/get-started/).

- Install the necessary packages listed in [requirements.txt](./requirements.txt) and [rpackages.R](rpackages.R).

```sh

pip install -r requirements.txt

Rscript rpackages.R

```

- Run quarto preview to view the HTML version of the site.

```sh

qurto preview

```

GitHub actions automatically publish the tutorial book whenever changes are made on the **master** branch.

## Dockerfile

To build the docker image, (defaults to port 8889)

```sh

docker build -t bioc .

docker run -it -p 8889:8889 bioc

```