https://github.com/biogenies/countfitter
https://github.com/biogenies/countfitter
cancer cancer-imaging-research count-data count-distribution foci
Last synced: about 1 year ago
JSON representation
- Host: GitHub
- URL: https://github.com/biogenies/countfitter
- Owner: BioGenies
- Created: 2018-06-11T09:52:59.000Z (almost 8 years ago)
- Default Branch: master
- Last Pushed: 2025-04-01T18:40:10.000Z (about 1 year ago)
- Last Synced: 2025-05-10T03:08:55.608Z (about 1 year ago)
- Topics: cancer, cancer-imaging-research, count-data, count-distribution, foci
- Language: CSS
- Homepage: http://biongram.biotech.uni.wroc.pl/countfitter/
- Size: 4.23 MB
- Stars: 4
- Watchers: 3
- Forks: 4
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
[](https://atm.amegroups.com/article/view/63994)
[](https://cran.r-project.org/package=countfitteR)
[](https://cran.r-project.org/package=countfitteR)
[](https://github.com/BioGenies/countfitteR/actions)
# countfitteR
countfitteR is a web server based on Shiny technology for selecting the most appropriate count distribution in provided data sets.
The functions of countfitteR can also be accessed through our [web server](http://biongram.biotech.uni.wroc.pl/countfitter/) or via the R console for customized analysis pipelines.
## Installation
*countfitteR* is available on [CRAN](https://cran.r-project.org/package=countfitteR).
```R
install.packages("countfitteR")
```
However, you can also install the developmental version of countfitteR directly from GitHub
```R
devtools::install_github("BioGenies/countfitteR")
```
## Run countfitteR
To run countfitteR type the following command into an R console.
```R
countfitteR::countfitteR_gui()
```
## How to cite
- Chilimoniuk, J., Gosiewska, A., Słowik, J., Weiss, R., Deckert, P.M., Rödiger, S., and Burdukiewicz, M. (2021). countfitteR: efficient selection of count distributions to assess DNA damage. Annals of Translational Medicine.
- Chilimoniuk, J., Gosiewska, A., Słowik, J., Weiss, R., Deckert, P.M., Rödiger, S., Burdukiewicz, M., (2021). countfitteR: efficient selection of count distributions to assess DNA damage. *Annals of Translational Medicine*. https://doi.org/10.21037/atm-20-6363
```tex
@Article{,
author = "Jarosław Chilimoniuk and Alicja Gosiewska and Jadwiga Słowik and Romano Weiss and P. Markus Deckert and Stefan Rödiger and Michał Burdukiewicz",
title = "countfitteR: efficient selection of count distributions to assess DNA damage",
year = 2021,
issn = {2305-5847},
journal = "Annals of Translational Medicine",
url = "https://atm.amegroups.com/article/view/63994",
}
@article{chilimoniuk_countfitter_2021,
title = {{countfitteR}: efficient selection of count distributions to assess {DNA} damage},
volume = {0},
issn = {2305-5847, 2305-5839},
shorttitle = {{countfitteR}},
url = {https://atm.amegroups.com/article/view/63994},
doi = {10.21037/atm-20-6363},
abstract = {countfitteR: efficient selection of count distributions to assess DNA damage},
language = {en},
number = {0},
urldate = {2021-03-15},
journal = {Annals of Translational Medicine},
author = {Chilimoniuk, Jarosław and Gosiewska, Alicja and Słowik, Jadwiga and Weiss, Romano and Deckert, P. Markus and Rödiger, Stefan and Burdukiewicz, Michał},
month = mar,
year = {2021},
note = {Number: 0
Publisher: AME Publishing Company}
}
```