https://github.com/bionode/bionode-go

Gene Ontology in Bionode (WIP)
https://github.com/bionode/bionode-go

api-client bioinformatics bionode nodejs tool

Last synced: 3 months ago
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Gene Ontology in Bionode (WIP)

• Host: GitHub
• URL: https://github.com/bionode/bionode-go
• Owner: bionode
• Created: 2014-12-09T00:48:52.000Z (about 10 years ago)
• Default Branch: master
• Last Pushed: 2017-06-01T22:41:58.000Z (over 7 years ago)
• Last Synced: 2024-08-09T20:28:27.951Z (6 months ago)
• Topics: api-client, bioinformatics, bionode, nodejs, tool
• Language: JavaScript
• Homepage: bionode.io
• Size: 6.84 KB
• Stars: 7
• Watchers: 23
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Code of conduct: CODE_OF_CONDUCT.md

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README

        
bionode-go

==========

Gene Ontology in Bionode

Will provide access to the public MySQL services of the Gene Ontology.

Have a look at go.js how to use go\_gene\_annotation.js to retrieve GO annotations for a particular gene. It's not much, but it's a start for your own explorations. All of GO can be queried via internet access to their MySQL server. Details and sample queries available here: http://amigo.geneontology.org/goose




Note: Another quick and dirty way to associate GO terms to target genes is the use of InterMine via their npm module. Alex from FlyMine wrote on 11/12/2014: "Sorry about the lack of good doc links on the NPM page - our API docs

are here: http://intermine.github.io/imjs/, and http://alexkalderimis.github.io/imjs/ (mine are sometimes

a little ahead of intermine's). I will make sure that they are more

discoverable in the future.

We also have some documentation here:

http://intermine.readthedocs.org/en/latest/web-services/#api-and-client-libraries

With some examples here:

http://intermine.readthedocs.org/en/latest/web-services/how-do-i/#howtows

If there are some examples you want to see, just let us know, and we

will add them to the how-do-I section."

All best,

Alex Kalderimis