https://github.com/bridgedb/bridgedb.github.io

Website of the BridgeDb project
https://github.com/bridgedb/bridgedb.github.io

elixir identifier

Last synced: 5 months ago
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Website of the BridgeDb project

Host: GitHub
URL: https://github.com/bridgedb/bridgedb.github.io
Owner: bridgedb
Created: 2020-02-12T17:18:03.000Z (over 6 years ago)
Default Branch: master
Last Pushed: 2024-07-31T10:58:25.000Z (almost 2 years ago)
Last Synced: 2024-09-23T00:10:41.824Z (almost 2 years ago)
Topics: elixir, identifier
Language: HTML
Homepage: https://bridgedb.org/
Size: 548 KB
Stars: 0
Watchers: 8
Forks: 4
Open Issues: 8
Metadata Files:
- Readme: README.md

Awesome Lists containing this project

README

# Standardised access to Identifier Mappings

{
"@context": "http://schema.org",
"@type": "SoftwareApplication",
"http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/ComputationalTool/1.0-RELEASE/" },
"name": "BridgeDb",
"@id": "https://bridgedb.org/",
"url": "https://bridgedb.org/",
"description": "Identifier Mapping Services for Genes, Proteins, Metabolites, Interactions, Diseases, Complexes, Publications, and more!",
"citation": "https://doi.org/10.1186/1471-2105-11-5",
"license": "https://spdx.org/licenses/Apache-2.0",
"applicationCategory": "Computational science tool",
"operatingSystem": ["Linux", "Windows", "Mac"]
}

BridgeDb is a framework to map identifiers between various biological databases and related resources.
These mappings are provided for genes, proteins, metabolites, metabolic reactions, diseases, complexes and publications.
BridgeDb includes a Java library that provides an API for programmatic access.

NEWS: Find the demo of the BridgeDb Shiny app [here](https://shiny.bridgedb.org) to map outdated identifiers!

Framework and libraries

Identifier Mapping Databases

Tutorials and Workflows

Webservice and API

Webservice implementation
Docker and semantic web

Documentation

Collaborators

Contact us

How to cite