https://github.com/bridgedb/datasources

Repository with the BridgeDb data source.
https://github.com/bridgedb/datasources

bridgedb life-sciences registry

Last synced: 9 months ago
JSON representation

Repository with the BridgeDb data source.

• Host: GitHub
• URL: https://github.com/bridgedb/datasources
• Owner: bridgedb
• License: cc0-1.0
• Created: 2021-04-24T08:30:02.000Z (about 5 years ago)
• Default Branch: main
• Last Pushed: 2025-07-28T17:23:30.000Z (11 months ago)
• Last Synced: 2025-07-28T18:43:53.604Z (11 months ago)
• Topics: bridgedb, life-sciences, registry
• Language: Python
• Homepage:
• Size: 172 KB
• Stars: 4
• Watchers: 7
• Forks: 7
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

          
[![DOI](https://zenodo.org/badge/361110347.svg)](https://zenodo.org/badge/latestdoi/361110347)

# datasources

Repository with the BridgeDb data source. The reason to abstract this out is that other tools no longer depend

on updates of the [BridgeDb Java](https://github.com/bridgedb/BridgeDb) library to use the information.

The following URLs can be used in downstream tools:

* [https://bridgedb.github.io/datasources/datasources.tsv](https://bridgedb.github.io/datasources/datasources.tsv)

* [https://bridgedb.github.io/datasources/datasources_headers.tsv](https://bridgedb.github.io/datasources/datasources_headers.tsv)

* [https://bridgedb.github.io/datasources/organisms.tsv](https://bridgedb.github.io/datasources/organisms.tsv)

It includes interoperability layers with [identifiers.org](https://identifiers.org/) and [Bioregistry.io](https://bioregistry.io/).

## Testing

There are tests for data integrity that can be run with the following commands

in the shell:

```bash

$ pip install tox

$ tox

```